Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0012 ATGAGAAGAGAAGATACAGCAGCTTCTCCCGCTTGCAATTCGTCTCCAAAGTCTGGTTCTGGAAAATTATCCAGGAGAAAGGGAGCGGCATGCAGCCAGCTGCAACGGGTGTTCCGCTACTTTGACAAGAACGGGGACGGAAAAATATCTCCGGAGGAGTTGCAGAGTTGTGTAAGAGCAGTGGGAGGGGAGCTGTCAGCAAAGGAGGCAGAAGCGGCAGTGAAGTCATCGGACATGGACGGAGATGGGATGCTGGGAATGGAGGATTTTGAGATGTTGATGGAGGCAAACGGAGAGGAGGAGGAGAAGACAAAGGACTTAAAGGAGGCATTTGGGATGTATGAGATGGAGGGGTCAGGATGCATCACGCCTAAGAGTTTGAAGAGAGTGCTGAGTCGACTGGGTGAGTCCAAGACCATTGAGGACTGCAAAGTCATGATTCATATGTTTGATATCAACGGAGATGGCGTCCTCAGCTTTGAGGAGTTCTCCGCTATGATGCGCTAG 507 0.5069 MRREDTAASPACNSSPKSGSGKLSRRKGAACSQLQRVFRYFDKNGDGKISPEELQSCVRAVGGELSAKEAEAAVKSSDMDGDGMLGMEDFEMLMEANGEEEEKTKDLKEAFGMYEMEGSGCITPKSLKRVLSRLGESKTIEDCKVMIHMFDINGDGVLSFEEFSAMMR* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0012 168 Gene3D - 97 168 - -
Vvi18g0012 168 Pfam EF-hand domain pair 33 94 IPR002048 GO:0005509
Vvi18g0012 168 Pfam EF-hand domain pair 105 168 IPR002048 GO:0005509
Vvi18g0012 168 Gene3D - 11 96 - -
Vvi18g0012 168 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Vvi18g0012 168 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Vvi18g0012 168 MobiDBLite consensus disorder prediction 1 29 - -
Vvi18g0012 168 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Vvi18g0012 168 CDD EFh 33 94 IPR002048 GO:0005509
Vvi18g0012 168 FunFam Putative calcium-binding protein CML19 29 97 - -
Vvi18g0012 168 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Vvi18g0012 168 SMART efh_1 33 61 IPR002048 GO:0005509
Vvi18g0012 168 SMART efh_1 69 97 IPR002048 GO:0005509
Vvi18g0012 168 SMART efh_1 142 168 IPR002048 GO:0005509
Vvi18g0012 168 SMART efh_1 106 134 IPR002048 GO:0005509
Vvi18g0012 168 CDD EFh 106 168 IPR002048 GO:0005509
Vvi18g0012 168 ProSiteProfiles EF-hand calcium-binding domain profile. 138 168 IPR002048 GO:0005509
Vvi18g0012 168 FunFam Calcium-binding protein CML38 98 168 - -
Vvi18g0012 168 SUPERFAMILY EF-hand 31 167 IPR011992 -
Vvi18g0012 168 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 106 167 - -
Vvi18g0012 168 ProSitePatterns EF-hand calcium-binding domain. 151 163 IPR018247 -
Vvi18g0012 168 ProSiteProfiles EF-hand calcium-binding domain profile. 29 64 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0012 Vvi-Chr18 227521 228027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0012 31 168 EF-hand Containing Proteins AT5G42380 60.432 1.52e-51 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0012 K13448 - vvi:100247858 310.457