Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0009 ATGGAGGCCAGTGCCGGTTTAGTGGCTGGCTCTCATAACCGCAATGAGTTGGTCGTCATCCGTCGCGACGGTGAATCTGGACCAAAGCCGTTGCAGCAGCTGAGTGGACAAATCTGCCAGATATGTGGAGATGATGTTGGGCTAAATGTGGATGGGGAGCTGTTCGTGGCCTGCAATGAATGTGCCTTCCCGGTTTGCAGAACTTGCTACGAGTACGAGCGCAGAGAAGGAAGCCAAGTGTGCCCCCAGTGCAAGACTAGGTTTAAACGTCTCAAGGGTTGTGCTAGAGTTGAGGGTGATGAAGAAGAAGACGACATTGACGATGTGGACAACGAGTTCAATTTTGAAGGGAGGGGTAAAGTGGATATGCAGGGTGCTCTTGCTGAAGCAATGCTTCAGGGCCACATGACCTATGGCCGCGCCTATGATTCTGACCTTCCTCATGTCTTTCATACCATGCCCCAAGTTCCTCTCCTTACCAACGGTCAAATGGTTGATGATATTCCTCCTGAGCAACATGCTTTGGTCCCTTCTTTCATGGGTGGTGGAGGCAAAAGAATCCACCCCCTTCCTTTCTCAGATCCTAACCTTCCAGTGCAACCCAGATCCATGGATCCCTCCAGGGACTTGGCTGCATATGGATACGGAAGTGTAGCTTGGAAGGAAAGGATGGAGAATTGGAAACAGAAACAAGAAAAATTACAGATGATGAAGAATGAAAATGGCGGCAAAGATTGGGACAATGATGGAGATGGGCCAGAGCTGCCACTGATGGATGAAGCAAGACAGCCATTGTCAAGAAAGTTGCCTATTTCGTCTAGCCAAATCAACCCATACCGAATGATCATCATAATACGATTGGTTGTCCTTGGTTTCTTCTTCCATTATCGAGTAATGCATCCTGTGAATGATGCTTATGCATTGTGGCTAGTCTCTGTCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGGTATGAGAAGGAAGGTCAACCTTCTCAACTATCTCCGGTGGATATATTTGTGAGTACAGTTGATCCACTAAAAGAGCCTCCTCTGGTGACTGCGAATACGGTTTTATCCATTCTTGCTGTGGATTACCCTGTTGACAAGGTCTCTTGTTATGTTTCTGATGATGGTGCTGCTATGCTGACATTCGAAGCCTTGTCAGAAACATCAGAGTTTGCAAGGAAGTGGGTCCCTTTCTGCAAGAAGTTCAACATTGAGCCACGGGCACCCGAGTTTTATTTTGCTCAGAAGATAGATTACCTCAAAGACAAGGTGCTACCTTCATTTGTGAAGGAACGAAGAGCAATGAAGAGAGAATATGAGGAATTCAAAGTTCGGATCAATGCTTTGGTTGCCAAGGCACAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACTCCATGGCCTGGGAATAACATCCGAGATCATCCTGGAATGATTCAGGTTTTTCTTGGTCAAAGCGGGGGGCATGACACAGATGGTAATGAATTGCCACGATTGGTATATGTCTCTAGAGAAAAGCGACCTGGGTTTAATCACCACAAAAAGGCTGGTGCGATGAATGCTTTGGTCCGAGTCTCTGCTGTGCTCACAAATGCACCATATCTGTTGAACTTGGATTGTGATCACTACATCAATAACAGTAAGGCTCTTAGGGAGTCTATGTGTTTCATGATGGATCCATTGCTTGGAAAGAGAGTCTGCTATGTTCAGTTCCCCCAGAGGTTTGATGGTATTGACAAAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATTAACATGAAAGGTTTAGATGGCATTCAAGGACCCATATATGTTGGGACTGGATGTGTGTTCAGAAGGCAAGCGCTATATGGTTATGATGCTCCAAAGACAAAGAAGCCACCGACAAGGACATGCAACTGCTGGCCAAAATGGTGCTGCTGTGGTGGAAGGAAGAAGAAGAAGAAGACTAACAAGCCTAAGTCTGAACTAAAGAAGAGAAATTCTAGGAAGGCAGATGCTGGAGGACATGTTCCTGTGTGTGCTTTAGAGGGTATTGAAGAGGGAATTGAAGGTATTGAAAGTGAAAATGTGGCTCTCATGTCTGAGCAGAAGCTGGAAAAGAAGTTTGGACAGTCTCCTGTATTTGTTGCCTCTACGCTGCTAGAGAATGGTGGCACACTAAAAAGTGCCAGCCCAGCTTCCTTGCTTAAGGAAGCCATTCATGTGATTAGCTGTGGCTATGAAGATAAAACAGAGTGGGGAAAGGAGGTTGGCTGGATATATGGCTCGGTTACGGAGGATATCTTGACGGGCTTTAAAATGCATTGCCATGGATGGCGATCCATATATTGTATACCTTCAAGACCTGCATTTAAAGGATCTGCACCCATCAATCTTTCTGATCGTCTTCACCAGGTCCTTCGGTGGGCTCTTGGTTCAATTGAAATTTTCTTGAGCCGGCATTGTCCCCTGTGGTATGGGTATGGAGGTGGTCTGAAATGGTTAGAGCGTCTGTCGTACATAAATGCTACTGTATATCCATGGACTTCAATTCCCCTGCTAGCATATTGTACCTTACCTGCTGTCTGCTTGCTCACTGGGAAATTTATTACTCCAGAGCTTAGCAACGTTGCTAGCTTGTGGTTTCTGTCACTTTTCATTTGTATTTTTGCAACTGGTATCCTGGAAATGAGATGGAGTGGAGTTGGAATTGATGAATGGTGGAGAAATGAACAGTTTTGGGTTATTGGAGGTGTTTCAGCACATCTGTTCGCGGTGTTCCAGGGACTTTTGAAGGTGTTAGCTGGTGTTGACACAAACTTCACTGTGACATCAAAAGCTGGGGATGACGTGGAGTTCTCAGAGCTGTATGCTTTCAAGTGGACCACATTGCTCATCCCACCCACCACACTGCTGATAATAAACCTGATTGGAGTTGTTGCTGGCATCTCAAATGCAATAAATAATGGGTATGAGTCATGGGGACCTCTGTTTGGTAAACTCTTCTTTGCATTCTGGGTGATAGTTCATCTCTATCCTTTCCTGAAGGGTTTGCTGGGTCGGCAGAACAGAACCCCCACGATCATTATCGTGTGGTCAATTTTGCTTGCCTCCATCTTCTCTCTTTTGTGGGTTCGGATTGATCCTTTTCTGGCCAAGTCAGATGGCCCAGTTCTGGAGGAATGTGGATTGGACTGTAATTAG 3276 0.4576 MEASAGLVAGSHNRNELVVIRRDGESGPKPLQQLSGQICQICGDDVGLNVDGELFVACNECAFPVCRTCYEYERREGSQVCPQCKTRFKRLKGCARVEGDEEEDDIDDVDNEFNFEGRGKVDMQGALAEAMLQGHMTYGRAYDSDLPHVFHTMPQVPLLTNGQMVDDIPPEQHALVPSFMGGGGKRIHPLPFSDPNLPVQPRSMDPSRDLAAYGYGSVAWKERMENWKQKQEKLQMMKNENGGKDWDNDGDGPELPLMDEARQPLSRKLPISSSQINPYRMIIIIRLVVLGFFFHYRVMHPVNDAYALWLVSVICEVWFALSWILDQFPKWLPIDRETYLDRLSLRYEKEGQPSQLSPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNIRDHPGMIQVFLGQSGGHDTDGNELPRLVYVSREKRPGFNHHKKAGAMNALVRVSAVLTNAPYLLNLDCDHYINNSKALRESMCFMMDPLLGKRVCYVQFPQRFDGIDKNDRYANRNTVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKTKKPPTRTCNCWPKWCCCGGRKKKKKTNKPKSELKKRNSRKADAGGHVPVCALEGIEEGIEGIESENVALMSEQKLEKKFGQSPVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPSRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYGYGGGLKWLERLSYINATVYPWTSIPLLAYCTLPAVCLLTGKFITPELSNVASLWFLSLFICIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDVEFSELYAFKWTTLLIPPTTLLIINLIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIIIVWSILLASIFSLLWVRIDPFLAKSDGPVLEECGLDCN* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0009 1091 Coils Coil 457 477 - -
Vvi18g0009 1091 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Vvi18g0009 1091 Pfam Cellulose synthase 359 1083 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi18g0009 1091 SUPERFAMILY RING/U-box 23 111 - -
Vvi18g0009 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 373 870 IPR029044 -
Vvi18g0009 1091 MobiDBLite consensus disorder prediction 675 696 - -
Vvi18g0009 1091 FunFam Cellulose synthase 476 650 - -
Vvi18g0009 1091 FunFam Cellulose synthase 21 112 - -
Vvi18g0009 1091 CDD mRING-HC-C4C4_CesA 37 87 - -
Vvi18g0009 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 513 656 IPR029044 -
Vvi18g0009 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 262 1057 - -
Vvi18g0009 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0009 Vvi-Chr18 160192 165198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0009 1 1090 Glycosyltransferase AT5G64740 73.059 0.0 1628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0009 K10999 - vvi:100242715 2169.43