Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0004 ATGGTGAAGGAGACAGAATACTATGACGTCCTGGGAATCAGCCCCTCGGCGACCGAGGCAGAGATTAAGAAAGCTTATTACATCAAGGCACGGCAGGTCCATCCAGATAAAAACCCCAATGATCCTCTTGCTGCACAAAATTTTCAGGTTTTGGGGGAGGCTTACCAAGTATTGAGTGATCCATCCCAGCGGCAGGCTTATGATGCTCATGGGAAGTCAGGAATTTCAACAGATTCCATTATTGAACCTGCAGCAATATTTGCAATGCTTTTCGGTAGTGAGCTTTTTGAGGAATACATAGGCCAGCTTGCAATGGCCTCAATGGCTTCACTGGACATTTTTACAGAAGGCGAACAGTTTGATGCTAAAAAGTTGCAAGAAAAAATGAGGGTTGTTCAAAAAGAAAGAGAAGAAAAACTTGCTGACATACTGAAGGACCGATTAAACCAATATGTTCAAGGGAACAAAGAGGATTTTGTTAATCATGCTGAAGCTGAATTATCAAGGCTCTCAAATGCAGCTTATGGTGTTGATATGTTGAATACAATTGGCTATATATATGCAAGACAGGCGGCTAAAGAGCTTGGGAAGAAGGCGATATATTTGGGTGTGCCGTTCATTGCTGAGTGGTTCAGAAACAAAGGCCACTTCATAAAATCCCAAGTAACTGCAGCAACTGGTGCTATTGCTTTGATTCAACTGCAAGAGGACATGAAGAAGCAGCTGAGTGCAGAAGGAAACTATACGGAGGAAGAGCTTGAAGAATACATGCAATCTCACAAAAAGCTAATGATTGATTCTCTGTGGAAGCTTAATGTAGCTGATATTGAAGCTACTCTTTCTCGTGTTTGTCAGATGGTTCTTCAAGATAACAATTGCAAGAAAGAGGAGCTTCGTGCACGGGCAAAGGGATTGAAGACTCTGGGAAAAATTTTCCAGAGGGTTAAATCATCCAATGGGAATGAGGATGAAGCTATGCTAAACAGTGCAGTCCATAAACTGAATGGAAGTGAACCAAGCCATGATGCTTGTTCTCCTAGTACCTCACCAAAATCTTCAAACCTTGAGGAGCAGTCTTATACTGCATTTGCATCACAGGTAACATTTTTTTTTTCTCCTCACTGA 1125 0.4187 MVKETEYYDVLGISPSATEAEIKKAYYIKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPSQRQAYDAHGKSGISTDSIIEPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEQFDAKKLQEKMRVVQKEREEKLADILKDRLNQYVQGNKEDFVNHAEAELSRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNCKKEELRARAKGLKTLGKIFQRVKSSNGNEDEAMLNSAVHKLNGSEPSHDACSPSTSPKSSNLEEQSYTAFASQVTFFFSPH* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0004 374 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 323 - -
Vvi18g0004 374 CDD DnaJ 6 60 IPR001623 -
Vvi18g0004 374 MobiDBLite consensus disorder prediction 340 357 - -
Vvi18g0004 374 MobiDBLite consensus disorder prediction 334 357 - -
Vvi18g0004 374 Gene3D DnaJ domain 1 84 IPR036869 -
Vvi18g0004 374 FunFam Chaperone protein dnaJ 10 1 83 - -
Vvi18g0004 374 SMART dnaj_3 5 63 IPR001623 -
Vvi18g0004 374 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Vvi18g0004 374 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vvi18g0004 374 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vvi18g0004 374 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vvi18g0004 374 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vvi18g0004 374 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vvi18g0004 374 Pfam X-domain of DnaJ-containing 133 326 IPR026894 -
Vvi18g0004 374 Coils Coil 122 142 - -
Vvi18g0004 374 Pfam DnaJ domain 6 68 IPR001623 -
Vvi18g0004 374 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0004 Vvi-Chr18 70324 86511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0004 7 68 Miscellaneous Gene Families AT1G16680 45.312 8.82e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0004 - - vvi:100259812 707.212