Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1123 ATGGCTTCATCATCAGCTCCAGTCATCAAACAACAAGACATTGCAGACACTATGCCCGACGCTTTAAAGCAGAGCCGATACCACATGAAGAGATGCTTTGCCAGATTCGTTGGGAGCGGGAGAAGGTTGATGAAGTATCGGCATATCATGGAGGAAATAGAGAAATCCATAGAGGACAAGGCTGAAAGAAGCAGGGTTATGGATGGCCTACTTGGTTACATCCTCAACACCACCCAGGAGGCCGCTGTTGTTCCACCATATGTTGCTTTTGCAGTGAGGCCTAGCCCGGGTTTATGGGAATTTGTTAAGGTGAGCGCAGATGATCTAGGCGTAGATGGCATCACTTCTGCAGAGTACTTGAAGTTTAAAGAAACCATCTTTGATGAAAACTGGGCAACTGATGAAAATACGTTGGAGATAGATTTTGGAGCATTTGACTACTCCACGCCTCACCTCACCCTTAATTCTTCTATTGGGAATGGACTCAACTATGTGTCCAAGTTCATGACATCCAAGCTTTCCGGGAGCTCTGAGAATGCCAAGCCTTTGGTGGAGTACTTACTCGCCATGAATCATCAAGGAGAGAGTCTTATGATCAATGAAATGCTAAATACAGTGTCCAAGCTTCAAACAGCATTGATTGTAGCTGAAGTTTTCGTCTCCTCTCTGCCTAAAGACACACCATATCAGAGCTTTGAGCAGAGGTTGAAGGATTGGGGTTTTGAGAAAGGATGGGGAGATAGTGCTGAGAGAGTTAAAGATACAATGAGGACACTCTCTGAAGTGCTCCAAGCCCCGGATCCAATGAAGATGGAGCTTCTCTTCAGCAGGCTCCCAAATATGTTCAACATTGTGGTCTTCTCTCCTCATGGATACTTTGGCCAGGCAGATGTTCTCGGTTTGCCAGATACCGGTGGCCAGGTGGTTTACATTCTAGACCAAGTGAAAGCTCTAGAGGAAGAATTGCTCCACAGAATCAAACAGCAAGGCCTAATTGTGAAGCCTCAGATTCTTGTGGTGACCAGGCTTATACCAGATGCAAGAGGGACAAAATGCGATCAGGAGATAGAGCCCGTCCTCAACACTAAACACTCTCACATTCTTCGGGTTCCGTTTAGGACCGAAAATGGGGTTCTTCGCCAATGGGTTTCCCGGTTTGACATCTACCCTTACCTTGAAAGATATGCTCAGGATGCTTCTGCTAAGATCCTTGCCCACATGGAATGCAAACCAGACCTCATAATTGGGAACTACACCGATGGAAACATGGTGGCGTCTTTGATGGCTAGCAAACTTGGCGTAACTCAGGGGACTATTGCTCATGCTTTGGAGAAAACCAAGTATGAGGATTCTGATGTGAAGTGGAAGGAGTTAGATGGAAAGTACCATTTTTCATGTCAATTCACAGCTGATATGTTTGCAATGAACGCGACCGACTTTATCATCACTAGCACATTTCAGGAAATTGCTGGAAGCAAGGACAGGCCTGGACAGTATGAAAACCATGCAGCCTTCACAATGCCAGGGCTTTGCCGAGTAGTTTCAGGAATCAATGTTTTTGATACAAAATTCAACATTGCTGCTCCTGGGGCTGACCAATCTGTCTACTTCCCCTACATGGAAAAACAAAAGAGGTTAACCTCATTTCATCCCGCCATTGAAGAACTACTCTACAGTAAGGAAGACAACAAAGAACACCTTGGGTATCTATCAGACAGAAAGAAGCCAATCATCTTCTCCATGGCAAGGCTAGATACAGTAAAAAACATTACAGGACTAACTGAATGGTATGGGAAGAACAAAAGGCTGAGAAGCTTGGTGAATCTAGTGGTGGTAGCAGGATTCTTTGATCCATCCAAATCAAAAGACCGAGAAGAAATCGCGGAAATAAAGAAGATGCATTCATTGATTGAGAAGTACCAACTCAAGGGCCAGCTAAGATGGATAGCAGCTCAGAATGATAGGAACCGCAATGGAGAGCTGTACCGCTGTATTGCAGATACAAAGGGGGCTTTTGTGCAGCCTGCACTGTATGAAGCTTTTGGGCTAACAGTCATTGAGGCGATGAACTGTGGGCTGCCCACCTTTGCAACCAACCAAGGAGGGCCAGCAGAGATTATTTTTGATGGGGTCTCAGGCTTCCACATCGACCCCAGCAATGGCGATGAGTCAAGCGACAAGATTGCTGACTTTTTTGAGAAGTGCAAAACAGATAGCGAGTATTGGAACAAGATCTCAACAGCGGGTCTGCAGCGTATATACGAATGCTACACATGGAAGATCTATGCGACCAAAGTGCTGAACATGGGCTCGACCTATGGCTTCTGGAGGCAGTTGAACAAGGATCAGAAGAATGCGAAGAACAGATACCTTCAATTGTTCTACAATCTCCAATTCAGAAAATTGGCGAAGGGTGTGCCCATCCTAAATGAAGAACCGCGAGAGGAACCCCAACAACCAGCAGCAACAGCAATAACTAAACCACAACAACCAGCACCAACGGAGGGAGCTAAGCCCCGACCATCAGCACCAACCACGGCACCAAAGCCTCAGCCAGCAGCAAGACGTCCACAATCTGGTGTCCAAAGGTATGGCGATAATCCCAAATGA 2610 0.4605 MASSSAPVIKQQDIADTMPDALKQSRYHMKRCFARFVGSGRRLMKYRHIMEEIEKSIEDKAERSRVMDGLLGYILNTTQEAAVVPPYVAFAVRPSPGLWEFVKVSADDLGVDGITSAEYLKFKETIFDENWATDENTLEIDFGAFDYSTPHLTLNSSIGNGLNYVSKFMTSKLSGSSENAKPLVEYLLAMNHQGESLMINEMLNTVSKLQTALIVAEVFVSSLPKDTPYQSFEQRLKDWGFEKGWGDSAERVKDTMRTLSEVLQAPDPMKMELLFSRLPNMFNIVVFSPHGYFGQADVLGLPDTGGQVVYILDQVKALEEELLHRIKQQGLIVKPQILVVTRLIPDARGTKCDQEIEPVLNTKHSHILRVPFRTENGVLRQWVSRFDIYPYLERYAQDASAKILAHMECKPDLIIGNYTDGNMVASLMASKLGVTQGTIAHALEKTKYEDSDVKWKELDGKYHFSCQFTADMFAMNATDFIITSTFQEIAGSKDRPGQYENHAAFTMPGLCRVVSGINVFDTKFNIAAPGADQSVYFPYMEKQKRLTSFHPAIEELLYSKEDNKEHLGYLSDRKKPIIFSMARLDTVKNITGLTEWYGKNKRLRSLVNLVVVAGFFDPSKSKDREEIAEIKKMHSLIEKYQLKGQLRWIAAQNDRNRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIFDGVSGFHIDPSNGDESSDKIADFFEKCKTDSEYWNKISTAGLQRIYECYTWKIYATKVLNMGSTYGFWRQLNKDQKNAKNRYLQLFYNLQFRKLAKGVPILNEEPREEPQQPAATAITKPQQPAPTEGAKPRPSAPTTAPKPQPAARRPQSGVQRYGDNPK* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1123 869 MobiDBLite consensus disorder prediction 834 851 - -
Vvi17g1123 869 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 300 768 - -
Vvi17g1123 869 Gene3D - 12 150 - -
Vvi17g1123 869 FunFam Sucrose synthase 13 150 - -
Vvi17g1123 869 Gene3D - 151 280 - -
Vvi17g1123 869 FunFam Sucrose synthase 532 759 - -
Vvi17g1123 869 PANTHER - 11 808 IPR012820 GO:0005985|GO:0016157
Vvi17g1123 869 Pfam Sucrose synthase 12 558 IPR000368 GO:0005985|GO:0016157
Vvi17g1123 869 MobiDBLite consensus disorder prediction 811 869 - -
Vvi17g1123 869 Pfam Glycosyl transferases group 1 568 735 IPR001296 GO:0016757
Vvi17g1123 869 Gene3D Glycogen Phosphorylase B; 532 759 - -
Vvi17g1123 869 Gene3D Glycogen Phosphorylase B; 285 802 - -
Vvi17g1123 869 FunFam Sucrose synthase 151 280 - -
Vvi17g1123 869 NCBIfam sucrose synthase 27 807 IPR012820 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1123 Vvi-Chr17 15994838 15998974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1123 16 807 Glycosyltransferase AT4G02280 56.566 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1123 K00695 - vvi:100252799 1720.67