Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g1121 | ATGCTTGAGCATTATAAAAAAGCAAACAATTATTTGGCTCTCAACCTCAATGATTTATCAGTTTGGTGTTTCTCATGTGACGCATATTTGGATGCTTAA | 99 | 0.3333 | MLEHYKKANNYLALNLNDLSVWCFSCDAYLDA* | 33 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g1121 | 32 | ProSiteProfiles | Zinc finger UBP-type profile. | 1 | 32 | IPR001607 | GO:0008270 | |
| Vvi17g1121 | 32 | Pfam | Zn-finger in ubiquitin-hydrolases and other protein | 1 | 31 | IPR001607 | GO:0008270 | |
| Vvi17g1121 | 32 | PANTHER | HISTONE DEACETYLASE-LIKE PROTEIN | 1 | 32 | - | - | |
| Vvi17g1121 | 32 | SUPERFAMILY | RING/U-box | 1 | 30 | - | - | |
| Vvi17g1121 | 32 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 32 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g1121 | Vvi-Chr17 | 15973976 | 15974151 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g1121 | - | - | sspl:121811517 | 53.1434 |