Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1119 ATGCCTCTCAGATTTGAGGTCAAGAACAACTACCTTCACCTTCTTGAAGCTTGCATACAATCCAAATCCCTCACTGAAGCCAAGAAAATCCACCAGCATTTCCTCAAGAACACCAGCAACGCCGACAGCTCTGTGCTTCACAAGCTCACCCGCCTGTACCTCTCATGCAATCAGGTTGTACTCGCCCGCCGCCTGTTCGATGAAATTCCCAACCCAAGTGTGATTCTTTGGAACCAAATCATCAGAGCTTACGCTTGGAATGGACCTTTTGATGGGGCTATTGATTTGTACCACAGTATGCTCCACCTGGGTGTCAGACCCAATAAGTATACCTATCCGTTTGTGCTCAAAGCTTGTTCGGGTTTGCTGGCCATAGAAGACGGTGTTGAAATTCACAGCCACGCTAAGATGTTTGGGCTTGAGTCTGATGTGTTTGTCTGCACTGCTTTGGTTGATTTTTATGCTAAGTGTGGGATTTTGGTGGAGGCACAAAGATTGTTTAGTAGCATGTCACATAGAGATGTTGTCGCATGGAATGCGATGATTGCTGGATGCTCTCTATATGGTCTTTGTGATGATGCCGTACAGTTGATTATGCAAATGCAGGAAGAGGGCATATGTCCCAACTCTTCGACAATTGTAGGGGTTTTGCCAACTGTTGGTGAAGCCAAAGCCTTAGGCCATGGGAAGGCATTGCATGGTTACTGTGTGAGGCGGAGTTTTGATAATGGTGTGGTGGTTGGCACCGGCCTTTTGGATATGTATGCAAAGTGTCAGTGTTTGTTGTATGCCAGGAAGATTTTCGATGTAATGGGAGTCAGGAATGAGGTAAGTTGGAGTGCAATGATTGGAGGGTATGTTGCAAGTGATTGTATGAAAGAAGCATTAGAGTTATTTGATCAAATGATACTCAAGGATGCTATGGATCCAACACCAGTTACTCTTGGGAGTGTGCTTCGGGCATGTGCAAAGCTGACTGATCTCAGCAGAGGGAGAAAGTTACACTGTTACATTATTAAATTGGGGTCTGTTTTAGATATACTGTTAGGCAACACACTTCTTTCGATGTATGCAAAGTGTGGGGTTATAGATGATGCAATCAGGTTCTTTGATGAGATGAATCCAAAAGACTCGGTTTCTTTCAGTGCCATTGTCTCTGGCTGTGTGCAGAATGGTAATGCAGCAGTGGCATTGAGTATTTTCCGAATGATGCAGTTGTCTGGTATTGATCCAGATTTGACAACCATGTTAGGTGTTCTTCCTGCTTGTTCCCACTTGGCTGCTCTGCAACATGGCTTTTGTAGCCATGGTTACTTAATTGTTCGAGGCTTTGCAACAGATACCCTAATTTGTAATGCTCTTATTGACATGTACTCCAAGTGTGGGAAGATCAGTTTCGCTAGGGAAGTTTTCAATAGGATGGATAGGCATGATATTGTCTCTTGGAATGCAATGATAATTGGATATGGAATTCATGGGCTTGGAATGGAAGCACTTGGCCTGTTCCATGACTTACTGGCCTTGGGTTTAAAGCCAGATGATATAACATTCATTTGTCTCTTATCTTCTTGCAGCCATTCAGGGCTTGTCATGGAAGGGAGACTCTGGTTTGATGCCATGAGTCGAGATTTCAGCATTGTCCCAAGGATGGAACATTGCATTTGCATGGTTGATATTCTTGGCCGTGCTGGACTTATAGACGAGGCTCACCATTTCATACGAAATATGCCATTTGAGCCTGATGTTCGCATATGGAGTGCTCTGCTTTCTGCCTGCAGGATCCATAAGAATATTGAACTTGGGGAAGAAGTATCTAAGAAGATCCAGAGTCTAGGACCTGAAAGTACCGGAAATTTTGTTCTTTTATCTAATATATACAGCGCTGCTGGAAGATGGGATGATGCAGCACATATTAGAATCACACAGAAAGATTGGGGTCTCAAGAAAATCCCAGGATGCAGTTGGATTGAGATAAATGGGATTGTTCATGCATTCGTTGGGGGCGACCAGTCCCATCTGCAGTTGTCACAGATAAACAGGAAACTAGAGGAACTGTTAGTGGAGATGAAAAGGTTGGGCTACCAAGCAGAGTGTAGCTTTGTCTTCCAAGATGTTGAAGAGGAGGAGAAGGAACAGATCCTCCTTTATCATAGTGAGAAGCTAGCTATTGCATTTGGAATTCTTAATCTGAAGGCTGGCAGGCCCATTCTTGTTACTAAGAATTTGCGGGTATGTGGTGATTGCCATACAGCAATAAAATTTATGACTCTCATTACAAAGAGAGAGATAACCGTAAGAGATGCGAATCGGTTTCATCATTTCAAGAATGGGACTTGCAACTGTGGAGATTTCTGGTGA 2358 0.4368 MPLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1119 785 Pfam DYW family of nucleic acid deaminases 693 785 IPR032867 GO:0008270
Vvi17g1119 785 FunFam Pentatricopeptide repeat-containing protein At3g63370, chloroplastic 330 428 - -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 480 513 IPR002885 -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 176 210 IPR002885 -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 351 373 IPR002885 -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 277 304 IPR002885 -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 76 108 IPR002885 -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 450 480 IPR002885 -
Vvi17g1119 785 NCBIfam pentatricopeptide repeat 379 412 IPR002885 -
Vvi17g1119 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vvi17g1119 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 310 IPR002885 -
Vvi17g1119 785 FunFam Pentatricopeptide repeat-containing protein chloroplastic 228 329 - -
Vvi17g1119 785 FunFam Pentatricopeptide (PPR) repeat-containing protein 542 704 - -
Vvi17g1119 785 Pfam E motif 595 657 IPR046848 -
Vvi17g1119 785 Gene3D Tetratricopeptide repeat domain 534 693 IPR011990 GO:0005515
Vvi17g1119 785 Gene3D Tetratricopeptide repeat domain 3 124 IPR011990 GO:0005515
Vvi17g1119 785 Gene3D Tetratricopeptide repeat domain 435 533 IPR011990 GO:0005515
Vvi17g1119 785 Gene3D Tetratricopeptide repeat domain 125 226 IPR011990 GO:0005515
Vvi17g1119 785 Gene3D Tetratricopeptide repeat domain 230 331 IPR011990 GO:0005515
Vvi17g1119 785 Pfam PPR repeat 379 409 IPR002885 -
Vvi17g1119 785 Pfam PPR repeat 351 373 IPR002885 -
Vvi17g1119 785 Pfam PPR repeat 277 304 IPR002885 -
Vvi17g1119 785 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 379 722 IPR046960 GO:0003723|GO:0009451
Vvi17g1119 785 Pfam PPR repeat family 478 525 IPR002885 -
Vvi17g1119 785 Pfam PPR repeat family 173 213 IPR002885 -
Vvi17g1119 785 Pfam PPR repeat family 72 119 IPR002885 -
Vvi17g1119 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vvi17g1119 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Vvi17g1119 785 FunFam Pentatricopeptide repeat-containing protein mitochondrial 430 541 - -
Vvi17g1119 785 Coils Coil 675 695 - -
Vvi17g1119 785 Gene3D Tetratricopeptide repeat domain 345 434 IPR011990 GO:0005515
Vvi17g1119 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Vvi17g1119 785 FunFam Pentatricopeptide repeat-containing protein At3g16610 85 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1119 Vvi-Chr17 15915385 15917742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1119 11 785 Glycoside Hydrolase AT3G49170 35.443 9.21e-172 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1119 - - vvi:100251168 1590.86