Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1113 ATGTCAACCCTGTTTCTAGTTGCACTGATGGCTCTGGCCATTGTCCAAAACTCAGCCATGTCTGATGATTTTAACCAACTCTTCCAACCCAACTGGGCTCCAGATCACATTTCCACTGAAGGTGACCAGATTAAACTCACACTGGACACAATTTCTGGATGCGGATTTGAATCCAAGAAAAAGTACTTATTTGGAAAAGTGAGTATGCAAGTGAAGCTGGTTGAAGGTGATTCAGCCGGAACAGTCACAGCCTTATATATGGCATCAGAAGGGCTTAACCATGATGAACTAGATTTTGAATTCCTGGGAAATGTGTCTGGAGAACCATACCTTGTTCAGACAAACGTTTATGTGAACGGGACTGGAAATAGAGAGCAGAGGCACACGCTTTGGTTTGATCCCACTGCTGCCTTCCATACCTACTCTTTCCTCTGGAATCGCTATTCCATTCTATTTCTTGTGGATGAAGTCCCAATTCGGGTATTTGCAAACAAGGAAGAAAATGGTGCACCATACCCGAAAACCCAAGCCATGGGGGTCCAGGGCTCGGTGTGGAATGCAGACGACTGGGCCACACAGGGAGGGAGGGTGAAGACCAATTGGAGCCATGCCCCATTTGTCTCAACTTTTAGAGGCTTTGAGATTGATGCTTGTGAGTTGAGTCCTGAGACAGATGATATTGCTAGTAGTAAGTGTGGAAGAGTAGGGGAGTTTTGGTGGGATAAGCCGAGGATGAGTGGGCTCAATAGGCACAAGAGCCACCAACTCAAGTGGGTTCGTAGAAGGCACTTGGTGTATGACTATTGCATGGATAGTGGGAGGTTCTATGAAATGCCTAGGGAGTGCATTGTTTGA 855 0.4632 MSTLFLVALMALAIVQNSAMSDDFNQLFQPNWAPDHISTEGDQIKLTLDTISGCGFESKKKYLFGKVSMQVKLVEGDSAGTVTALYMASEGLNHDELDFEFLGNVSGEPYLVQTNVYVNGTGNREQRHTLWFDPTAAFHTYSFLWNRYSILFLVDEVPIRVFANKEENGAPYPKTQAMGVQGSVWNADDWATQGGRVKTNWSHAPFVSTFRGFEIDACELSPETDDIASSKCGRVGEFWWDKPRMSGLNRHKSHQLKWVRRRHLVYDYCMDSGRFYEMPRECIV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1113 284 Pfam Glycosyl hydrolases family 16 26 202 IPR000757 GO:0004553|GO:0005975
Vvi17g1113 284 Gene3D - 9 284 - -
Vvi17g1113 284 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 8 210 IPR000757 GO:0004553|GO:0005975
Vvi17g1113 284 FunFam Xyloglucan endotransglucosylase/hydrolase 10 284 - -
Vvi17g1113 284 ProSitePatterns Glycosyl hydrolases family 16 active sites. 96 106 IPR008263 GO:0004553|GO:0005975
Vvi17g1113 284 PIRSF EndGlu_transf 1 284 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vvi17g1113 284 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 283 IPR013320 -
Vvi17g1113 284 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 282 IPR044791 GO:0004553
Vvi17g1113 284 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 282 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vvi17g1113 284 CDD GH16_XET 23 282 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1113 Vvi-Chr17 15631827 15634275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1113 50 282 Glycoside Hydrolase AT4G03210 64.807 7.06e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1113 K08235 - vvi:100244455 597.43