Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1070 ATGGATCACAGAAGAGGAGAAGAGAATGGGTTGGATGGGAACAGCTACAACTCAGACATTGAAGCTGAGATCATCAACAAGAAGAACCCAAAGGAGAGGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAGATGTCGGTGGAGAGGATTTTTGAGAGCAAGGAGGTGCCATCATGGAGAGAACAACTGACTGTGAGAGCCTTTGTGGTGAGCTTAGTGGTTGGAGTACTCTTCACCTTCATAGTGATGAAGCTCAACCTCACCACTGGTATCATCCCTTCTCTAAATGTCTCTGCGGGGCTCTTGGGCTTCTTCTTCACCTCCGGTTGGACCAAGTTTCTGGACAACTCCGGACTTCTGAAGCAGCCCTTTACTCGACAGGAGAACACTGTTATTCAGACTTGTGTTGTGGCCATCTCTGGGATCGCCTTCAGCGGAGGTTTTGGAAGCTACCTCTTTGGAATGAGTGAAGTTGTTGCCAAAGAATCTGAAGATGTTCAAAGCAGCCAGGACTATAAGAATCCGGCAATAGGATGGATGATTGGCTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTCTCTGTCTTGCCTCTTCGAAAGATCATGATCATAGACTTCAAGTTGACATACCCAAGTGGCACTGCAACTGCTCATCTTATCAACAGTTTCCATACTCCTGAAGGAGCCCGGTTAGCAAAGAAACAAGTGAGGGTATTGGGGAAGTTCTTCTCCTTCAGTTTCTTGTGGAGTTTCTTTCAGTGGTTCTTTGCTGCTGGAGATGATTGCGGATTTAAAGCCTTCCCTACATTTGGACTTAAAGCTCAGGAAAACATGTTTTTCTTTGATTTCTCGACAACATATGTTGGAGTAGGGATGATTTGTCCGTACATTGTAAACATATCCTTGCTGCTTGGAGGCATTCTTTCTTGGGGCATCATGTGGCCTCTCATTGAAACTAGAAAGGGTGATTGGTACCCTGCAGACCTTCCACCAAAAAGCATTAAAGGTCTGCAAGGTTACAAGATATTCATTGCCATTGCCATGATCCTAGGTGATGGCCTATATAACTTCTTCAAGGTAATAAGCCAAACTCTCTTGGGCTTGTTTTACCATCTCCGGCACAAGGACGCTAGCATTGTCCTCCCTCTAGAGGACCGTTCCTCTCCTACCAACTCCTCTCTTTCTTACAATGACAAGCGCCGAACCCAACTGTTTCTCAAAGATCAAATTCCAATACCATTTGCTGTTGGAGGGTATATTGCAATAGCTGCTATCTCCACAGCCACACTTCCTCACATATTCCCCCAACTCAAATGGTACTACATAGCTGTCATGTACATTGCTGCCCCTATCATGGCATTTTGCAATGCATATGGGTGTGGGCTCACTGATTGGTCCCTTGCGTCCACCTATGGGAAGCTTGCCATCTTTACCATTGGGGCATGGGCTGGGGGTGCCCATGGCGGAGTCATAGCAGGTTTGGCAGCCTGTGGAGTGATGATGAATATCGTCTCAACAGCTTCTGACCTAATGCAGGATTTCAAAACTGGTTATCTAACCTTAGCTTCACCTCGCTCAATGTTTGTGAGCCAATTGATTGGCACTGCAATGGGTTGTGTAATTGCCCCTTGTGTGTTTTGGCTCTTCTACAAGGCCTTTGATGACCTAGGGCAAGATGGAAGTGAATATCCTGCTCCTTATGCTCTGGTGTACCGTAACATGGCTATTCTGGGGGTGGATGGCATCTCCTCCTTACCAAAGAATTGCTTCCTTCTTTGTTGTGTATTCTTCGCTGCAGCAGTTCTTGTCAACTTGGTTAGGGATGCTGTAGGTAAAAGGAGATCAAGGTTCACTCCGATTCCAATGGCGATGGCGATACCACTTTATCTAGGCCCCTACTTCGCCATTGATATGTGTGTTGGGAGCTTAATATTATATATATGGGAAAGGATGAACAAAGCCAAGGCAGATGCTTTTGGACCTGCAGTTGCTTCTGGTTTGATTTGTGGAGATGGAATATGGACTTTGCCTAGTTCAATTCTTGCTTTAGCAGGAGTAAAGCAACCAATCTGTATGAAGTTCCTGTCTAGGGCAACAAATGTTAGGGTTGATAAACTCTTGGGGTCTTAG 2127 0.456 MDHRRGEENGLDGNSYNSDIEAEIINKKNPKEREEEEEEEEEEMSVERIFESKEVPSWREQLTVRAFVVSLVVGVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFTSGWTKFLDNSGLLKQPFTRQENTVIQTCVVAISGIAFSGGFGSYLFGMSEVVAKESEDVQSSQDYKNPAIGWMIGFLFVVSFLGLFSVLPLRKIMIIDFKLTYPSGTATAHLINSFHTPEGARLAKKQVRVLGKFFSFSFLWSFFQWFFAAGDDCGFKAFPTFGLKAQENMFFFDFSTTYVGVGMICPYIVNISLLLGGILSWGIMWPLIETRKGDWYPADLPPKSIKGLQGYKIFIAIAMILGDGLYNFFKVISQTLLGLFYHLRHKDASIVLPLEDRSSPTNSSLSYNDKRRTQLFLKDQIPIPFAVGGYIAIAAISTATLPHIFPQLKWYYIAVMYIAAPIMAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGGAHGGVIAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQLIGTAMGCVIAPCVFWLFYKAFDDLGQDGSEYPAPYALVYRNMAILGVDGISSLPKNCFLLCCVFFAAAVLVNLVRDAVGKRRSRFTPIPMAMAIPLYLGPYFAIDMCVGSLILYIWERMNKAKADAFGPAVASGLICGDGIWTLPSSILALAGVKQPICMKFLSRATNVRVDKLLGS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1070 708 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 35 695 IPR045035 GO:0035673
Vvi17g1070 708 NCBIfam OPT family oligopeptide transporter 58 681 IPR004813 GO:0035673
Vvi17g1070 708 MobiDBLite consensus disorder prediction 1 44 - -
Vvi17g1070 708 Pfam OPT oligopeptide transporter protein 61 680 IPR004813 GO:0035673
Vvi17g1070 708 Coils Coil 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1070 Vvi-Chr17 14475366 14480298 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1070 - - vvi:100252983 1348.57