Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1064 ATGATACTAATTTATTTCCTCTATTTGATCATCAGGTGCAATTATCTTACATACATATGCTTTCAACCTAATGGACACTGGAGACTCCTTACAGTCCCATTTCTATCTCACGAGAACTCAAACCTCGTGGGATATGGAGTTCAGATTGGAATGAATGATTTTCTACTGATTTCCCCAACACCTGTTGGTTCACCCAGGGCTCGTCAACAAAAAGAGCAGAGGGGTTCTCGTCATCATGATGCCTCTTCATCTGCTGAGTCTTCAACAAGCAGAAACTCCTCTGAATTGGACACGAATTGTCAATCTGCAAGCCAGTCCCTGGCTAACAAGGCCACTACGTCTAATGAAGCTTCTTGCAGTGACACTGTCGGTAAGATCTCAAATGAATTTGATGCCGTTAATTCATCTGAAGCATTAATTGATAGATCCAAGGCAGAGAAGAATGCGAGAAGAAATGCAAAAAAGAAGGCACGGAGGAAGGAAAAGCGAAAGGAGAAACTTTCAATGGGTAATACTGGCTCTACTGAGCTTGAAGTTTTGTCTGAGGAATGCGCACCTGAAAGTTCGACATCTGAAACATGTACTAACAATGATATGAATTGTGGAGATGGACCTGTTTCGCAAGAAACTACCCCAGTTGATCAGTTGCCCGATTTTCAGATTAATGAAAATGACTCTGGGGGAGACAGTAACAGCCTCATAACTGACTGTTCTGAAACATCAGAACATCCCATGTCCCATTCTGAAGATGGAATTCAAACCAGATATCTGGGGTTTTCCATTTTGAAAGGACCAGAGGAGAAACATGATGAACAACTCTATTGTTGTGATGATATGTCCGCAAAGGGTGTCTTTGATATGCCTGACTGTGTCATACTAGACTCAGTTTCTGCTGGCCATGAAGCCATTACGGAAGCTGGTTATGATGTAAATCGATCTAACTTAGAAAGTAATTGTGTTAGCCTTTCCCAAGAAATCTGTCATACTGGAATAAAGGAGTGCTTTTCTGACCAGAGTTCACTAAATGGTGTTGTAACAAAGTTTCAGACTCAGGAGTGTAGCAGCAGTGACATGCAACCGGTTGTGCCAGGAAAGAGAGACAAACAAGCAAAAATGCTTCCCCAGAATGGCCAAGAAAGGAAGGAAAACAATCCTTCTGTGTGGCAAAAAGTTCAGAGAGATGGGGTATCAAAATGTGAAGATAAAAGTGAATCAAAAGCTGAGGATTCTAGGAGATCGAATCTGGGTGAAGAACAATCTGCAGTTCACAGTCATACTCTTTCTGGATGCAGCAAGCAAGAGCTCGGTTCTTCATCTATTATCAAGAAATCAATACCCATGGAGAAAGATCCTAGATTGAAAATTTTGAGTAGATTTGAGAGATCGATATTGGCACATGGTGATGAACCAACTGCTGAAGCTTGGAGTACTCAAAACAACTTTGCTGGAGAAAAATCATCTTCTGATTCTCACAAGCTTACTGTTCCGAAAAAGTCTGAATTAATGTGTGGGGCACATGGTTTTGGAGCTGATTCAAGCAAGATTTCAGGAGCATTAAATGATTCGTATAGAGCACAACAACAATCTGAGGCTCTTCAACTGGCCACAGGCAGTCCAATTGCTGAATTTGAGAGACTCATCAGTGCAGCAACTCCGGCTATCTGCCAGTGGAACAAGGTTAGAATTTGTTCAACTTGCTCTCATGAAGTCAACCAACCTTTATGCAGAAATGAGATACCGAAATTCTCTCTGAGACACCTCTGGAAGTGGTATGAGAAGCACGGCAGCTATGGGTTGGAAGTTTCATCAGAGGAATTCAGTTACTCAAAGAGAACAGGTTTCCATCACTCAGCTTTTCGTGCTTACTTCGTCCCTTCCCTGTCTGCCATCCAACTGATCAAGGCGCTGATTGGAGAGGGTGAACTTTCGCCAAACAAAATGTATGGTGATCCTAGAAAGTTAGACTCCATGAAACTAAATAAACTCCATCCCCGATCCTGGTACTCGGTGGCATGGTATCCTATTTATAGGATACCAAATGGCGAACACCGTGCTTCGTTTTTGACCTATCACTCATTCAGCCATCTGGTTTGTAGGAGCTCCACTTTTGGCTCCAAGAGAATGGACGGTTGTATGGTTTCTCCCGTTGTTGGTCTTCAAAGTTACAATGCTCAGGTACGTTGGTTCCTTTTGAAACAATTTGGGCTGAGCCAGGCAGGAGAAACTCCAAAATTAAACCCTGCTGAAATTCTGGGAGACCGAGTGCAGACACTAGAGCGGGCAGCATCTGTTTTGGCAAGAGGAGAAGTTAGCAAGGGGAATCTGAAGTTTGTGAACAGACATCCAGACCATGAGTTCTTTCTCTCCAGGCGACGGTGA 2379 0.4296 MILIYFLYLIIRCNYLTYICFQPNGHWRLLTVPFLSHENSNLVGYGVQIGMNDFLLISPTPVGSPRARQQKEQRGSRHHDASSSAESSTSRNSSELDTNCQSASQSLANKATTSNEASCSDTVGKISNEFDAVNSSEALIDRSKAEKNARRNAKKKARRKEKRKEKLSMGNTGSTELEVLSEECAPESSTSETCTNNDMNCGDGPVSQETTPVDQLPDFQINENDSGGDSNSLITDCSETSEHPMSHSEDGIQTRYLGFSILKGPEEKHDEQLYCCDDMSAKGVFDMPDCVILDSVSAGHEAITEAGYDVNRSNLESNCVSLSQEICHTGIKECFSDQSSLNGVVTKFQTQECSSSDMQPVVPGKRDKQAKMLPQNGQERKENNPSVWQKVQRDGVSKCEDKSESKAEDSRRSNLGEEQSAVHSHTLSGCSKQELGSSSIIKKSIPMEKDPRLKILSRFERSILAHGDEPTAEAWSTQNNFAGEKSSSDSHKLTVPKKSELMCGAHGFGADSSKISGALNDSYRAQQQSEALQLATGSPIAEFERLISAATPAICQWNKVRICSTCSHEVNQPLCRNEIPKFSLRHLWKWYEKHGSYGLEVSSEEFSYSKRTGFHHSAFRAYFVPSLSAIQLIKALIGEGELSPNKMYGDPRKLDSMKLNKLHPRSWYSVAWYPIYRIPNGEHRASFLTYHSFSHLVCRSSTFGSKRMDGCMVSPVVGLQSYNAQVRWFLLKQFGLSQAGETPKLNPAEILGDRVQTLERAASVLARGEVSKGNLKFVNRHPDHEFFLSRRR* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1064 792 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 633 792 - -
Vvi17g1064 792 Coils Coil 143 163 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 394 418 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 355 433 - -
Vvi17g1064 792 Pfam Protein of unknown function (DUF789) 653 787 IPR008507 -
Vvi17g1064 792 Pfam Protein of unknown function (DUF789) 541 633 IPR008507 -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 419 433 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 60 102 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 149 163 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 170 210 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 82 102 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 376 391 - -
Vvi17g1064 792 MobiDBLite consensus disorder prediction 141 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1064 Vvi-Chr17 14285204 14293195 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1064 - - vvi:100258195 1213.36