Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1054 ATGGAGAAGACAGAAGAAGAAGAAGAACAAAAAAGCTCCTCTCTGTTTCCTCTCCAAGCCGCTTCAGCTGCCTCACTCGCAAGCAGCTCAAACGTCCCTCAATGGCTCTGCAACACCAGCTTCAACACCGACCTGTCCGTCGTAAACGACGCCGTTTCATCCCTCTACAACCTCACCGCCGCCCAATCCGAAGACGATGAGCCACGACAACAGCAAGCGACGCCCAAGCCTTCTTCCTACGACTTGCTGCAATCTTCAGAATCCGATGATGGAGGTCGCGACTCCAAGAGGGAAGCGAAGAAACATAAGAAGCGGAAGAGGAGGAGGTACAGTGAAGAAGAAGCTTCTGCCGCCAACGATTATGCCTCGAGGAAATCTGGCGTTGGAGCTTGGGCAACTCGGGGTTCGAAGCCTTCTGTCAAAGATTATTACTTCGATTCTAGAGGTGATCGTGATAATTTGGCCTTCGGATGTCTCTACAGAATGGATGTTGCACGGTACAAGCTTGGCAATTCTGCAAAACTCTTTCAGCCTGGTTTTCAAGCTTTGTACTGGTGGAATAAAATGGGTTCAATCTTGGATAGAGACGGTGATCTTGATGTGTTAGACAGTAAACTTAAAACCGGTGGGCGGTACTGGTCTGCAAAGCACTCTGTTCTAGAGCGCCATAAGAACCTCAAGCGCATTCGAATTGTTGCACATGAAAAGTCCAAGATAGTGATTCCCGGTGACTTCATTCCTTTATCTGAAATTCAAACATCTCCTGTAGATGTTATTGATGGATCATCTCTAGGAACTTCAACAAGTGAAGAATCGTGGGAAGATGAGGTATTACGCAAAACACGTGAGTTCAACAAGATGTCGAGGGAGCATCCACATGATGAAAAAATTTGGTTATCTTTCGCAGACTTTCAAGATAGGATTGCAAGTATGCAACCACAAAAAGGTGCTCGTTTGCAGACTCTAGAGAAGAAAATTAGTATACTGGAGAAGGCAACTGAGCTTAACCCGGAAAACGAAGAATTGCTGCTTTGTCTTATGAAGGCTTATCAGAGCAGAGACAGCACTGATGTCTTTATAGGTAGATGGGAAAAGATACTCTTGCAACATTCTGGGAGTTACATGTTGTGGAAAGAGTTTCTGCATGTTGTTCAAGGGGAATTCTCCAGATTCAAGGTTTCTGACATGAGAAAATTGTATGTACATGCAATCCAAGCTCTCTCTGCCGCATGCAGCAAGCAGTATAGGCAGGTTCACCAAACTGCTAAAAGTCCTACCTCGGATCCTGCTGTTATTGAGCTAGAACTTGGTTTGGTAGACATATTTCTGAGCCTTTGCCGGTTTGAGTGGCAGGCTGGCTATCAGGAGTTGGCTACTGCTCTATTTCAAGCTGAAATTGAATATGGTTTGTTATGTCCTTGTCTATTTCTTTCTGAGCAGAGTAAACAAAGATTATTTGAGCATTTTTGGAATGGTGATGGTGCAAGAGTTGGAGAAGAAGGGGCCCTGGGTTGGTCCACATGGTTGGAAAAGGAGGAGGAAAACAGACAACAGGTTATGAAAGAGGAGACTGCGGATGAAAACGACAAAGGTGGGTGGACAGGTTGGTCAGAACCATTGTCAAAACAGAAGGAAATAAATCTGGAAAAAACCAGTATAAATCTGGAAAATGTAGCTGACAATGATGTGGATGTGGATGTGGAGGATCTTGAAGACAAATTAGAGACCAAAGACACAGAGCAGGAAGAAGACACAGAAGCTTTGATGAAAATGCTGGGCATTGATGTCAATGCTGAAGCCAATAATGAGGTTAAAGACACTTCAATCTGGACTAGATGGTCAGAAGAAGAGTCATCAAGGGACTGCAATCAGTGGATGCCTTTCCATACCAAATCTGTTGGGCCTTCTCATATGGATGAATCTCCTGATAAACAATTGGATGAGCAACTTTTGGGAGTCATATTATTTGAAGATGTCAGTGAATACCTGTTCTCTTTAAGCTCAGGAGAGGCTCGCATATCTCTTCTATTCCACTTCATTGATTTTTTTGGTGGAAAGATACCTGAATGGATGTGCACAAACAACTCAAGTTGGACTGAGAAAATCCTGAGCCTGGAGGCAGTGCCAGATTTCCTCTCAGAAAAATTGAGAAGGGTTAATGATGTTTTAACCAAAACTCAAACCAGCTCGTGTGGGTTCAGTTTGGAAGTTCTGCTGGGCAATGCACATGATGCTTCTAGGAGGATTGATATGATGAAATTTCTTCGCAATGCTATCTTACTTTGTTTAACTGCTTTTCCACGTAACCACATTTTGGAGGAAGCTGTTCTTGTTGCTGAAGATATGTTTCTTACAAAAATGAATTCTTGTAGCTGTTCAGTTACCCCATGCCGAGGTTTAGCAAAGGGCCTCTTAAAAAATGATCGACAGGATCTGTTGCTATGTGGAGTTTATGCACGAAGAGAGGCCATTTTTGGGAATATTGATCATGCAAGAAGGGTGTTTGACATGGCATTATCATCTATTGAGAGCCTTCCAGCGGATCTTCAGTTGAATGCACCTCTTATATATTTCTGGTATGCTGAGACAGAGCTTTCCAACAGTTCTGGCAACAGCTCAGAGTCATTGAAGCGGGCAATACACATCCTATCCTGTTTGGGAAGTGGTGTTTCATATAATCCATTTAAATGTCAGCCATCAAGTCCGCAACTCCTTAGAGCCCACCAAGGGTTCAAAGAACGAATCAGGATGCTGCGAACAACATGGGCACGTGGCATTATAAATGATAGTTCTACTGCTCTCATTTGTTCAGCTGCTTTGTTTGAAGAGTTGACTACTGGATGGGTTGCTGCCGTTGAAGTTTTAGATCATGCTTTTTCCATGGTTCTTCCAGAGAAAAGAAGCCAAAGTCATCAACTTGAATTTCTGTTCAACTATTATCTTCGGATCCTTCAGAAACACCATAAGCAAACAAGACTATCAAAATTCTTGGAGTCCATCTCGTTGGGTTTGCAAATATACCCTTCCAGCCCAGAACTTTTTACTGCTTTAGTGGAGATTAGCCATCTATATACTGTCCCCACTAAACTAAGGTCAATATTGGATGACTTTTCTAACAAAAAACCATCTGTGATGGTTTGGCTCTTTGCAGTGTCATATGAATTGATCAGAGGTGGCTCCCAGCATAGAATTCATGGATTGTTTGAAAGAGCATTGTCAAATGATAGGTTGCGCCACTCAGTACTACTCTGGCGTTGCTACATTGCATACGAGATTGATATAGCAAGCAATCCTTCTGCAGCTCGACGAGTTTTTTTCCGTGCTATCCATGCCTGTCCATGGTCCAAGAAGCTATGGCTTGATGGATTTCTGAAGCTGAAGAGCGTTTTAAGTGCAAAAGAGATGTCAGATCTGCAGGAAGTAATGAGGGATAAGGAATTGAATGTGAGGACGGACATCTATGAGATTCTTCTGCAAGATGATGTGGGACCCTGA 3495 0.4323 MEKTEEEEEQKSSSLFPLQAASAASLASSSNVPQWLCNTSFNTDLSVVNDAVSSLYNLTAAQSEDDEPRQQQATPKPSSYDLLQSSESDDGGRDSKREAKKHKKRKRRRYSEEEASAANDYASRKSGVGAWATRGSKPSVKDYYFDSRGDRDNLAFGCLYRMDVARYKLGNSAKLFQPGFQALYWWNKMGSILDRDGDLDVLDSKLKTGGRYWSAKHSVLERHKNLKRIRIVAHEKSKIVIPGDFIPLSEIQTSPVDVIDGSSLGTSTSEESWEDEVLRKTREFNKMSREHPHDEKIWLSFADFQDRIASMQPQKGARLQTLEKKISILEKATELNPENEELLLCLMKAYQSRDSTDVFIGRWEKILLQHSGSYMLWKEFLHVVQGEFSRFKVSDMRKLYVHAIQALSAACSKQYRQVHQTAKSPTSDPAVIELELGLVDIFLSLCRFEWQAGYQELATALFQAEIEYGLLCPCLFLSEQSKQRLFEHFWNGDGARVGEEGALGWSTWLEKEEENRQQVMKEETADENDKGGWTGWSEPLSKQKEINLEKTSINLENVADNDVDVDVEDLEDKLETKDTEQEEDTEALMKMLGIDVNAEANNEVKDTSIWTRWSEEESSRDCNQWMPFHTKSVGPSHMDESPDKQLDEQLLGVILFEDVSEYLFSLSSGEARISLLFHFIDFFGGKIPEWMCTNNSSWTEKILSLEAVPDFLSEKLRRVNDVLTKTQTSSCGFSLEVLLGNAHDASRRIDMMKFLRNAILLCLTAFPRNHILEEAVLVAEDMFLTKMNSCSCSVTPCRGLAKGLLKNDRQDLLLCGVYARREAIFGNIDHARRVFDMALSSIESLPADLQLNAPLIYFWYAETELSNSSGNSSESLKRAIHILSCLGSGVSYNPFKCQPSSPQLLRAHQGFKERIRMLRTTWARGIINDSSTALICSAALFEELTTGWVAAVEVLDHAFSMVLPEKRSQSHQLEFLFNYYLRILQKHHKQTRLSKFLESISLGLQIYPSSPELFTALVEISHLYTVPTKLRSILDDFSNKKPSVMVWLFAVSYELIRGGSQHRIHGLFERALSNDRLRHSVLLWRCYIAYEIDIASNPSAARRVFFRAIHACPWSKKLWLDGFLKLKSVLSAKEMSDLQEVMRDKELNVRTDIYEILLQDDVGP* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1054 1164 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL 13 1159 IPR013633 -
Vvi17g1054 1164 SUPERFAMILY TPR-like 1006 1121 IPR011990 GO:0005515
Vvi17g1054 1164 Coils Coil 509 529 - -
Vvi17g1054 1164 MobiDBLite consensus disorder prediction 13 29 - -
Vvi17g1054 1164 SMART hat_new_1 826 866 IPR003107 GO:0006396
Vvi17g1054 1164 SMART hat_new_1 1059 1093 IPR003107 GO:0006396
Vvi17g1054 1164 SMART hat_new_1 275 307 IPR003107 GO:0006396
Vvi17g1054 1164 SMART hat_new_1 320 352 IPR003107 GO:0006396
Vvi17g1054 1164 SMART hat_new_1 1096 1129 IPR003107 GO:0006396
Vvi17g1054 1164 MobiDBLite consensus disorder prediction 60 119 - -
Vvi17g1054 1164 MobiDBLite consensus disorder prediction 60 86 - -
Vvi17g1054 1164 MobiDBLite consensus disorder prediction 1 29 - -
Vvi17g1054 1164 Pfam NRDE-2, necessary for RNA interference 280 685 IPR013633 -
Vvi17g1054 1164 Coils Coil 567 587 - -
Vvi17g1054 1164 Gene3D Tetratricopeptide repeat domain 974 1138 IPR011990 GO:0005515
Vvi17g1054 1164 Gene3D Tetratricopeptide repeat domain 271 515 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1054 - - vvi:100255247 2211.42