Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1053 ATGAACACTCAAACCTTCTATTTCCTGCTACAAAAATGTGGGAGCCTTGAGAAGCTGAAGCAAATCCATGGAAAGGCAGTAACTTTAGGATTACTCTGCAGCAAACGCCAGCACTTGGCCTGCAAATTACTCAACACCTACACCCAACTGGGCAGCCCAGTCGATGCCCAGAAGGTTTTCAACCACATTCAAAACCCAGATATAGTCTCATGGACATGTCTAATTTCTCTCTATTTGCACACTTCTCAGCCATGCAAAGCCTTCTCTATCTTCTCCCACTTGTTTCACAGTGGCCTCAGGCCTGATAGCTTCTGTGTTGTCGGAGCTGTATCTGCTTGCGGCCATAGGAAAGATCTGAGTAATGGAAGAATAGTTCATGGGATGGTTTTTAGATTTGAGTTGGGTTCAGACCCCATTGTGGGCAATGCGTTGATTGATATGTATAGCAGAAGTGGTGCAATTGAGGTGGCCTGTTCAGTGTTCAAGACCATGGAAATTAAGGATGTGTCTTCTTGGACCAGTTTGCTTAATGGGTTTATCAAGTGCAATGATATTGAGGCTGCTCGTCGAATATTCGATGAAATGCCGATGAGGAACTCGGTTTCTTGGACTGCAATGATCACCGGGTACGTTCAGGGTGAGGTCCCGATTCCAGGGTTGGAACTGTTTCAGGAAATGAGAGCAGAAGGGAAGGATTGGCCTACTGTGATCACCATAGTGGCTGTTCTTTCGGGTTGTGCTGATATTGGGGCATTTGATCTTGGAAGCTCTGTTCATGGTTATGTTAACAAAACCAATCTAGATTTGGATGTCACTGTGAACAATGCTCTGATGGATATGTACGCAAAGAGTGGTGCCCTTGTGTTGGCTCTGAAGATCTTCCAGGAGATGCCTAAAAGGGATGTGTTTTCATGGACTACCATGATTTCTGGGCTTGCCCTTCATGGGAAAGGGACGCATGCACTTGAGGCTTTTTCAGACATGTCAAAGTCAGGCGTTGTGCCTAATGAGGTTACACTTTTGTCGGTTCTATCAGCTTGTAGCCATGCAGGACTGGTTGTCGAGGGCCGGAGCTTGTTCCAGAAGATGGTTCAGTGCCATGGAATTAAGCCCAAGATTCAGCACTATGGGTGTATGGTGGATCTTCTTGGCCGAGCAGGGCTTTTGAGAGAAGCAAAAGAGTTAATTGAGCATATGCCCATTAAACCCGATTCTGTGATCTGGAGATCGCTGCTTAGTGCTTGTTTAGTTCATGGAAATTTGGCATTGGCTGAAATGGCAGGGAAAATGATAATTGAATTAGAACCAGATGATGATGGGGTGTATATACTTCTATGGAATATCTATTGTTCTGCAAGTAGGTGGGAGGATGCACTGAAGGCAAGAAAGGCGATGAGGGACCGAAGGGTTAAGAAAAAACCCGGATGTAGTTGGGTTGAGGTGAATGGTGTTGTTCATGAATTCCTTGCAGAAGACGCAGTTCATTGCATCCGTGCAGACGTTTATACTGTTCTTGAAGCGATCACAGAGCAGATGAAGGATTTGGACAAATAA 1554 0.453 MNTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMKDLDK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1053 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi17g1053 517 Pfam PPR repeat 142 167 IPR002885 -
Vvi17g1053 517 Pfam PPR repeat 171 198 IPR002885 -
Vvi17g1053 517 Pfam PPR repeat 201 230 IPR002885 -
Vvi17g1053 517 Pfam PPR repeat 376 399 IPR002885 -
Vvi17g1053 517 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 274 497 - -
Vvi17g1053 517 FunFam Pentatricopeptide repeat-containing protein 1 124 - -
Vvi17g1053 517 FunFam Pentatricopeptide repeat-containing protein chloroplastic 125 270 - -
Vvi17g1053 517 Pfam PPR repeat family 300 348 IPR002885 -
Vvi17g1053 517 Gene3D Tetratricopeptide repeat domain 198 299 IPR011990 GO:0005515
Vvi17g1053 517 Gene3D Tetratricopeptide repeat domain 128 197 IPR011990 GO:0005515
Vvi17g1053 517 NCBIfam pentatricopeptide repeat 171 200 IPR002885 -
Vvi17g1053 517 NCBIfam pentatricopeptide repeat 340 371 IPR002885 -
Vvi17g1053 517 NCBIfam pentatricopeptide repeat 303 337 IPR002885 -
Vvi17g1053 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Vvi17g1053 517 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 514 IPR046960 GO:0003723|GO:0009451
Vvi17g1053 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 300 IPR002885 -
Vvi17g1053 517 Pfam E motif 418 480 IPR046848 -
Vvi17g1053 517 Gene3D Tetratricopeptide repeat domain 317 496 IPR011990 GO:0005515
Vvi17g1053 517 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Vvi17g1053 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1053 Vvi-Chr17 13861905 13863458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1053 5 513 Glycoside Hydrolase AT3G49170 35.010 4.05e-102 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1053 - - vvi:100260323 1046.96