Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1019 ATGGAGGCCGCTGCAGTGTTGGGAGCGAGACCGTCTGTTTCATCATCTTATCTTCATTCGCAAACTCAGAGGCATTGCAGCTTATACGTCGTCTCCCAGAAGCCTACCCTGCGCTCCGACCACCGCCGCCTAGCAGCTTTCCACTCACCGTCCAATCTTTTCTCATATTCCCCATTTCGTCCTCATGCTCGCAGCACCAAACCCCGCATCTTCCTTCCCCACTTGGTTGCTTCCATGGAGCAGGTTGAAGAAACTTACATCATGGTCAAACCCGACGGCGTTCAACGGGGCCTCGTTGGAGAGATTATTTCTAGGTTTGAGAAGAAGGGTTTCAAGTTAACTGGCTTGAAGCTATTCCAATGCCCCAAACAATTGGCTGAGGAGCATTATAAGGATCTCAAGGAAAAGTCATTCTTCCCGAAACTAATTGAATACATTACTTCTGGTCCGGTTGTTTGTATGGCTTGGGAAGGTGTTGGTGTTGTTGCTTCAGCACGTAAGCTAATAGGGTCAACAAATCCCCTTCAGGCAGAACCAGGCACAATCAGAGGAGACCTTGCAGTTCAAACAGGAAGGAATGTGGTTCACGGGAGTGATAGCCCTGAGAATGGAAAACGTGAAATATCTCTCTGGTTTAAAGAAGGTGAATTATGTGAATGGGCACCTGTACAAGCACCATGGCTGAGGGAGTGA 693 0.4848 MEAAAVLGARPSVSSSYLHSQTQRHCSLYVVSQKPTLRSDHRRLAAFHSPSNLFSYSPFRPHARSTKPRIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCPKQLAEEHYKDLKEKSFFPKLIEYITSGPVVCMAWEGVGVVASARKLIGSTNPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREISLWFKEGELCEWAPVQAPWLRE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1019 230 Gene3D - 78 230 IPR036850 -
Vvi17g1019 230 PRINTS Nucleoside diphosphate kinase signature 170 186 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi17g1019 230 PRINTS Nucleoside diphosphate kinase signature 193 212 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi17g1019 230 PRINTS Nucleoside diphosphate kinase signature 129 148 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi17g1019 230 PRINTS Nucleoside diphosphate kinase signature 85 107 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi17g1019 230 PRINTS Nucleoside diphosphate kinase signature 149 166 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi17g1019 230 ProSitePatterns Nucleoside diphosphate kinases active site. 193 201 IPR023005 -
Vvi17g1019 230 Hamap Nucleoside diphosphate kinase [ndk]. 82 217 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vvi17g1019 230 SMART ndk_5 82 219 IPR034907 -
Vvi17g1019 230 SUPERFAMILY Nucleoside diphosphate kinase, NDK 82 228 IPR036850 -
Vvi17g1019 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 77 229 - -
Vvi17g1019 230 FunFam Nucleoside diphosphate kinase 79 230 - -
Vvi17g1019 230 Pfam Nucleoside diphosphate kinase 83 216 IPR034907 -
Vvi17g1019 230 CDD NDPk_I 83 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1019 Vvi-Chr17 12530868 12532960 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1019 K00940 - vvi:100242823 464.922