Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1016 ATGGAAAGCCAAGATGGAACTCAGCAACCACACCTGGTTCTCGCTCACAAGCTTTTCCTTCTCACCCACCCTGACGCTCAAGACATCGAGAAAGTTCGCCTCAAAGAAGAGGTGTTCGCCGCTGTCAAAGTCGACGATATGGCTTCGTTATACGAAACCCTAGCCGCCGATTCGGTGCTGGAAATGGATCAGGCTGTTTTGGATACAATGCGTGCGAAGATCGATGATGAGCTGAAGAAGCTTGATGAAAAGATTGCTGATGCTGAAGAGAACTTAGGCGAAAGTGAAGTTCGGGAAGCTCATCTAGCTAAATCCTTGTTTTACATTCGGATTGGTGACAAGGAGAAAGCATTGGAGCAACTCAAAGTAACAGAAAGCAAGACAGTGGCAGTTGGACAAAAGATGGACTTGGTGTTCTATACGCTTCTGCTTGGTTTTTTCTATATGGATTTTGATCTCATTTCCAAAAGCATTGATAAGGCAAAGAACTTGTTTGAAGAGGGAGGTGATTGGGAAAGGAAGAACCGTTTGAAGGTGTATGAAGGCCTGTACTGCATGTCCACTAGAAACTTCAAGAAGGCAGCCAATTTATTTTTGGATTCGATCTCAACCTTCACAACTTATGAACTTTTCCCTTATGACACCTTCATATTCTACACTGTCCTTACAAGCATTATATCACTGGATAGGGTTTCCCTGAAACAGAAGGTAGTGGATGCTCCTGAGATTCTGGCAGTGATTGGAAAAATCCCTTATCTATCAGAGTTTCTTAACTCTCTGTATGATTGTCAATACAAATCGTTTTTCTCGGCATTTGCTGGCCTTGCGGAGCAAATAAAATTGGACCGCTATCTGCATCCACACTTCCGGTATTACATGAGGGAAGTCAGGACTGTAGTTTATTCTCAATTTTTGGAATCTTATAAGAGTGTTACCATTGAAGCCATGGCAAAGGCCTTTGGGGTGACAGTGGAGTTCATTGATTTGGAGTTATCACGTTTTATTGCAGCAGGGAAGCTTCACTGCAAGATTGATAAAGTTGCAGGTGTTCTAGAAACCAACCGACCCGATGCAAAGAATGCTCTTTACCAAGCAACTATCAAGCAAGGAGACTTCTTATTAAACCGGATTCAGAAGCTGTCTCGTGTTATTGATCTGTGA 1161 0.4289 MESQDGTQQPHLVLAHKLFLLTHPDAQDIEKVRLKEEVFAAVKVDDMASLYETLAADSVLEMDQAVLDTMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLLLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLAEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1016 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 IPR000717 -
Vvi17g1016 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Vvi17g1016 386 Pfam PCI domain 254 354 IPR000717 -
Vvi17g1016 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
Vvi17g1016 386 Gene3D - 7 337 - -
Vvi17g1016 386 PANTHER 26S PROTESOME SUBUNIT 6 9 386 IPR019585 -
Vvi17g1016 386 Coils Coil 71 98 - -
Vvi17g1016 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Vvi17g1016 386 FunFam 26S proteasome regulatory subunit N7 11 337 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1016 K03037 - vvi:100258219 747.658