Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1011 ATGCTCAAATCAACCTTCACTCCCATTCTCTCGATTATCACCCCCAAACCCACAACCTCAAAACCCTCTAAAATCTTCACCAAAGCCTTCTCACAATCCCCACCAACTGTTCGAAAAAATGATTCACACAACCCCTCCACCACAACCCCACCACATAATCTCCCTCCTGTTTCAGCTTATATTCACCTCCCTTTCTGCAGAAAGCGCTGCCACTACTGTGATTTCCCAATTGTCGCTCTCGGGTCTTCTTTTACCCCACCACCTGAGGACGATCCCAGAATCTTGAACTACACCCAACTCATTTGTCGAGAAATTGAAGCGACAAAACCAGAATGCTATCCCACCCCACCTCTTGAAACAGTGTTTTTTGGAGGCGGCACGCCATCCCTTGTGCCGCCGAGGCTGGTTTCTGATATAGTTGAAGCGTTGAGGTTGAAGTTTGGGTTGTGCTTGGATGCTGAAATGTCCATGGAAATGGACCCTGGGACTTTTGATGCAGAGAAACTGAAGGGATTGATGGAGTTGGGTGTGAATAGGGTGTCTTTGGGAGTTCAGGCATTTCAGGAAGAGATGTTGAGGGGATGTGGGAGAGCACATGGTGTGAAGGAGATTTATGAGGCAATTGAGACCGTCAAGTCATGTGGGGTTGAGAACTGGAGTGTGGATCTCATCTCTTCTCTCCCTCACCAAACACCAGAAATGTGGGAGGAGAGTTTGCAGCTTGTCATTGAAGCGCAGCCTACCCATGTGTCGGTTTATGATTTGCAAGTTGAACAAGGCACCAAATTTGGAATACTGTACACACCAGGGGAGTTCCCTCTGCCCTCTGAAATCCAATCAGCAGACTTCTATAGAATGGCTTCCACCACCCTTTCTAATGCGGGCTATAATCATTATGAAATCAGCAGTTACTGCAAGGGTGGGTTTGAGTGCAAGCACAATCTTACCTATTGGGAGAACAAACCTTTCTATGGTTTTGGCCTTGGGTCTGCCAGTTATGTTGGTGGAGTGAGGTTTTCAAGGCCGAGAAAGATGAAAGAGTATATGGGTTATGTGCAGAGCTTGGAAACCGAGGTGGTGGGTTGTGGGGGTAATTCTGTTGATGCCAAGGATGTGGCAATGGATGTTGTGATGCTCTCTCTTAGAACTGCCAGAGGCTTGGATTTGAAGTCCTTCAGAAATTCATTTGGTAGCTCTTTTGTTGCCTCTCTTTGCATGGCCTATAGACCCTATGTGAAAAGTGGGCATGTGGTTTGTTTGGATGAGCAGAGGAGACCTGTAACTTCAGATGAATTCAGCTCCTTGCTATCCAAAGATGATGGGATTGAAGAACGGCTGGCATTTGTTCGGCTTAGTGATCCTGATGGTTTCCTCCTATCAAATGAATTGATATCACTAGCATTTCAGGCCATAGCTCCTTAA 1422 0.4662 MLKSTFTPILSIITPKPTTSKPSKIFTKAFSQSPPTVRKNDSHNPSTTTPPHNLPPVSAYIHLPFCRKRCHYCDFPIVALGSSFTPPPEDDPRILNYTQLICREIEATKPECYPTPPLETVFFGGGTPSLVPPRLVSDIVEALRLKFGLCLDAEMSMEMDPGTFDAEKLKGLMELGVNRVSLGVQAFQEEMLRGCGRAHGVKEIYEAIETVKSCGVENWSVDLISSLPHQTPEMWEESLQLVIEAQPTHVSVYDLQVEQGTKFGILYTPGEFPLPSEIQSADFYRMASTTLSNAGYNHYEISSYCKGGFECKHNLTYWENKPFYGFGLGSASYVGGVRFSRPRKMKEYMGYVQSLETEVVGCGGNSVDAKDVAMDVVMLSLRTARGLDLKSFRNSFGSSFVASLCMAYRPYVKSGHVVCLDEQRRPVTSDEFSSLLSKDDGIEERLAFVRLSDPDGFLLSNELISLAFQAIAP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1011 473 Gene3D tm_1862 like domain 64 268 IPR023404 -
Vvi17g1011 473 SFLD anaerobic coproporphyrinogen-III oxidase like 56 425 - -
Vvi17g1011 473 SUPERFAMILY Radical SAM enzymes 38 421 - -
Vvi17g1011 473 MobiDBLite consensus disorder prediction 30 53 - -
Vvi17g1011 473 SFLD HemN-like, clustered with heat shock genes 56 425 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vvi17g1011 473 MobiDBLite consensus disorder prediction 30 48 - -
Vvi17g1011 473 Pfam Radical SAM superfamily 61 242 IPR007197 GO:0003824|GO:0051536
Vvi17g1011 473 SMART MiaB 56 286 IPR006638 GO:0003824|GO:0051536
Vvi17g1011 473 NCBIfam radical SAM family heme chaperone HemW 58 403 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vvi17g1011 473 ProSiteProfiles Radical SAM core domain profile. 51 297 IPR007197 GO:0003824|GO:0051536
Vvi17g1011 473 CDD Radical_SAM 66 209 - -
Vvi17g1011 473 PANTHER COPROPORPHYRINIGEN III OXIDASE 32 472 IPR034505 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1011 - K07739 vvi:100241088 961.444