Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1002 ATGTTGGATTATCAGCTAGCAAGGTCTTCTTTCCGAGACTCCCTTAAGGCTCTTGAGGCTGACATACAGCACGCCAATTTTCTGGCAGCTTCAATTCCCAGAACCAAGAATGGTTCTTGGCTTCAGATGAAATTGGCCTACAATAACTTAACGCCAATATTTCTTTTCTTTATCCAGTGGATGAATTGCTCATGTACATATCTGCTTCCCAGTTATTTAAACCTTGTCCACATAGTTATATACAAGGTGCACCCAGAAAGGCGACTAAAGATCTCATCATATGGAAGGAAAGCAACATTAAGGGAATTCTATGCTGTGATATTACCATCTCTTCAACATCTGCATAGTTATTCATCTGAGCTAGATTATGCTCAAGAGGAAGATCAAAGGTTGCAGCCAGTTGTTAGGAAGAGACCAGAGGAGAGGAAGAAGCTTTTGAATGTTGATTTGGAGAGAGAGGATGAATGTGGGATCTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCTAACTGCTGCCATATGATGTGCATAAGCTGCTTCCGTGACTGGAACACAAAGTCAGAATCTTGCCCATTTTGTCGGGTTAGTCTAAAGAGAGTGAATTCAGGGGACTTATGGGTTCTCCCCTGCAGAGATGATGTTGTTGACATGGAAACTGTATCAAAGGAGGACGTGTTGCACTTTTATCTCTATATACACAACCTGCCAAAGAAAAAAGGCCACACAAAGCTTTAG 735 0.4204 MLDYQLARSSFRDSLKALEADIQHANFLAASIPRTKNGSWLQMKLAYNNLTPIFLFFIQWMNCSCTYLLPSYLNLVHIVIYKVHPERRLKISSYGRKATLREFYAVILPSLQHLHSYSSELDYAQEEDQRLQPVVRKRPEERKKLLNVDLEREDECGICLEPCTKMVLPNCCHMMCISCFRDWNTKSESCPFCRVSLKRVNSGDLWVLPCRDDVVDMETVSKEDVLHFYLYIHNLPKKKGHTKL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1002 244 FunFam RING/U-box superfamily protein 136 203 - -
Vvi17g1002 244 PANTHER RING FINGER PROTEIN 41, 151 9 240 - -
Vvi17g1002 244 SUPERFAMILY RING/U-box 145 199 - -
Vvi17g1002 244 Pfam Ring finger domain 154 194 IPR001841 -
Vvi17g1002 244 SMART ring_2 156 193 IPR001841 -
Vvi17g1002 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 216 IPR013083 -
Vvi17g1002 244 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1002 Vvi-Chr17 12211544 12214781 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1002 - - vvi:100251822 496.893