Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1001 ATGGCTTCCTCTTTCAAATTGTTCTCTTCTCTGAGTTCTCTCACCACCATCCTCATCCTCATCCTATTGTCCTCCTTATGTACTGCTTCTACTGCTCCAACTGGGACTAATTCACCTCCCTTCAAGAGGATCTATGCCTTTGGAGACTCATACACTGACACAGGCAACACAAGGTCAGCCACTGGCCCAAATGCTTTCACCTATGTATCAAACCTCCCATATGGCAGCACCTTCTTTCATCACCCCACCAACCGATACTCCGATGGAAGGCTAGTGATCGACTTTGTTGCTCAGGCGCTGTCTTTGCCCTTCTTGCCACCTTACCGCAGCCAGAAGGCCAATACATCCACTGGTGTGAACTTTGCGGTTGCAGGGTCTACCGCTATACCCCATGAGTTCTTCGTGAAGAACAACCTAACTCTTGATATCACTCCTCAGTCAATCCAAACTCAGCTCATTTGGTTCAATGAGTTCTTGGAGAAGCAAGGATGCAGAGGGGCCACCAAAAACTCTGGTTGCACATTTGATGATACATTGTTCTGGGTTGGAGAGATCGGAGCCAATGACTATGCATACACTGTTGGATCTTCTGTGCCAGGCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCAACTGGATGTCTCACACTGGCCTTGACACTGGCTCCTGATGATGACAGAGATGCAATAGGGTGTGTTGGGAGTGTGAACAAGCAGAGCTACAGCCACAACACCATCCTCCAAGCCAAGCTTCATGATCTCAGGGTACAATTTCCCCATGCTGTCATTGTTTATGCTGATTACTGGAATGCCTACCACACCATCATGAAGAATGGAGACAGGTATGGTTTCAAGGAGCCATTCAAAACTTGCTGTGGATCTGGTGGTGACCCCTATAATTTTGATGTGTTTGCCACCTGTGGCTCATCTTCTGCAAGTGCTTGTCCAAATCCTTCCCAGTACATCAATTGGGATGGAGTTCACCTCACAGAGGCCATGTATAAGGTGGTTGCTAATTCGTTTCTCCACGGTGGATTCTGTCACCCTCCATTTGATTACTTGTTAAGCAGGAAACAGCATTTGGGATGA 1155 0.4762 MASSFKLFSSLSSLTTILILILLSSLCTASTAPTGTNSPPFKRIYAFGDSYTDTGNTRSATGPNAFTYVSNLPYGSTFFHHPTNRYSDGRLVIDFVAQALSLPFLPPYRSQKANTSTGVNFAVAGSTAIPHEFFVKNNLTLDITPQSIQTQLIWFNEFLEKQGCRGATKNSGCTFDDTLFWVGEIGANDYAYTVGSSVPGSTIQELGIKSITSFLQALLKKGVKYLVVQGLPPTGCLTLALTLAPDDDRDAIGCVGSVNKQSYSHNTILQAKLHDLRVQFPHAVIVYADYWNAYHTIMKNGDRYGFKEPFKTCCGSGGDPYNFDVFATCGSSSASACPNPSQYINWDGVHLTEAMYKVVANSFLHGGFCHPPFDYLLSRKQHLG* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1001 384 Gene3D SGNH hydrolase 32 366 IPR036514 -
Vvi17g1001 384 CDD SGNH_plant_lipase_like 44 366 IPR035669 -
Vvi17g1001 384 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 20 372 - -
Vvi17g1001 384 Pfam GDSL-like Lipase/Acylhydrolase 44 362 IPR001087 GO:0016788
Vvi17g1001 384 SUPERFAMILY SGNH hydrolase 40 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1001 Vvi-Chr17 12208771 12210124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1001 7 371 Acyl Lipid Metabolism Gene Families AT4G10950 27.225 1.32e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1001 - - vvi:100251794 750.74