Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0993 ATGCTCATTTTCTTCGAACAGGACAGAGGTCGGCCATTGCCTAAATTTGGCGAGTGGGATGTGAACAACCCTGCCTCCGCTGAGGGATTTACAGTAATATTTAACAAGGCTAGAGATGAGAAGAAGACTAATGCTGCTGGGAACGTTGCATCACCACGAAGAAATGGTAATGGATATAAGCAAAATGAGGATTATCATTATTCCCCAAAGAGGAAGTGGTTTTGCTGTGGTTGA 234 0.4359 MLIFFEQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNAAGNVASPRRNGNGYKQNEDYHYSPKRKWFCCG* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0993 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 8 43 IPR008700 -
Vvi17g0993 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 8 75 IPR040387 -
Vvi17g0993 77 MobiDBLite consensus disorder prediction 48 62 - -
Vvi17g0993 77 MobiDBLite consensus disorder prediction 41 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0993 Vvi-Chr17 12001824 12004340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0993 - - vvi:100241554 159.844