Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0982 ATGTGGTCCAATCTTGGTATCTCACTGCAGTTATCAGAGGAGCCAGCGCAGGCAGAACAAGTATACAAGCGAGCCTTGTCCTTGGTGACCCCTCAGCAGGCATATACAATATTTTCCAACCTTGGGAATCTATATAGGCAACAAAAGAAGTACCAATCTGCAAAAGCAATGTTTACAAAGTCACTCGAACTCCAACCCGGTTATGCTCCTGCATATAACAATCTAGGTCTGGTATTCATTGCTGAGGGTCGGTGGAAGGAAGCCGAATTCTGCTTCAACAAGGCCCTCCAGGCAGACCCACTGCTGGATGCGGCCAAGTCCAACATGATCAAAGCAGCGGCCATGTCCAGAGTCTGTCAGCATCTCTCCTCATGTTCGCTTCAAGATTGA 390 0.4821 MWSNLGISLQLSEEPAQAEQVYKRALSLVTPQQAYTIFSNLGNLYRQQKKYQSAKAMFTKSLELQPGYAPAYNNLGLVFIAEGRWKEAEFCFNKALQADPLLDAAKSNMIKAAAMSRVCQHLSSCSLQD* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0982 129 SMART tpr_5 69 102 IPR019734 GO:0005515
Vvi17g0982 129 SMART tpr_5 1 32 IPR019734 GO:0005515
Vvi17g0982 129 SMART tpr_5 35 68 IPR019734 GO:0005515
Vvi17g0982 129 ProSiteProfiles TPR repeat profile. 35 68 IPR019734 GO:0005515
Vvi17g0982 129 SUPERFAMILY TPR-like 2 112 IPR011990 GO:0005515
Vvi17g0982 129 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Vvi17g0982 129 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 2 126 - -
Vvi17g0982 129 Pfam Tetratricopeptide repeat 36 98 - -
Vvi17g0982 129 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Vvi17g0982 129 ProSiteProfiles TPR repeat region circular profile. 69 100 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0982 4 109 Glycosyltransferase AT3G04240 31.132 8.95e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0982 - - vvi:100256924 259.225