Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0981 ATGTCGGAACCGGCGGCGACCAAACCGCAGCCACTCCCTATAAAATCTGAAGTCGGTGTCACAGAGAACTCGGCCGACGAGAGCTCGAAGCGGCCGCAGATTTCCAAAGTGGTGGTTTTAGCCGACCTCAACGTCGACCCTCCTGAGACTGACGACGACGATTCCCTCCACGTCTCCGCTCCCGATCTCACCAGGTTGACCAATGATGATAGCAGTCAAGATAAAAGTACCTTAGTGAGCAAAGACACAGATATGGTGGATGGAGAAGGTAAACGGTTAAACAAATTGGGGAAGCCCCGTTCAAGAGTTACTAAGGTGGAGTACCCTCTTGATTATGGGGCTGATGCAGATGCTGACCAGCATGGTCAAGGGGCTCCCACATCCCGTGAGGAAAAAGTCAGCAGTCTTAAGACCGGTTTGGTACATGTAGCAAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGATTAATGTATCAGAGGTTGGGTCAGCCACAAAAGGCAGTTTCTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGTGCCTTCTTCTAGGAAGTTCAGGTGATCATAGCGCAGACAAAGAACTTGAACCTGAAGAATTGGAGGAAATTCTTTTGAAAATGAAGGATTCAATGCAATCAGATATTAGACAGGCGGCTGTGTGGAATACTCTCGGCTTAATACTTCTTAGAACTGGCCGTCTGCAGAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTGGATTGCCTTGGAAACCTTGGAATTGCTTACCTTAGAAGTGGGAATTTGGAGCTTGCAGAAAAATGTTTTCAGAATTTGATTTTGAAAGATCAAAATCATCCTGCTGCTCTAATCAACTATGCTGCAGTTCTAATGTGTAAATATGGCTCGATCATTGCAGGTGCTGGGGCAAATTCTGGTGAAGGAGCTTCTGAGGATCAGCTTATAGCTGCCAATGTTGCAAAAGAGTGTTTGTTAGCAGCAGTAAAAGTGGAACCCAAAGCAGCACATGTTTGGGCAAATCTCGCAAATGCTTATTATTTGATGGGTGATTGTAGAAGTTCTAGCAAGTGCTTCGAGAAGGCAGCAAAACTAGAGCCCAATTGTATGTCTACACGATATGCTGTTGCAGTCCACCAAATCAAGGATGCAGAAAGATATCAAGATCCTAGTGAACAGCTTTCCTGGGCTGGAAATGAAATGGCTTCTATACTAAGAGAAGGAGATTCTGCTCTCATTGAGCATCCCATAGCATGGGCAGGGCTTGCCATGGTTCATAAGATCCAGAATGAAATTGCAGCAGCATTTGAAACTGAGCATAAAGGGTTGATGGAGATGGAAGAGCGTGCTGTACACATTTTAAAGCAGGTATTTTGGCTTTCAATTTCTGCTTTTGCATAA 1488 0.4496 MSEPAATKPQPLPIKSEVGVTENSADESSKRPQISKVVVLADLNVDPPETDDDDSLHVSAPDLTRLTNDDSSQDKSTLVSKDTDMVDGEGKRLNKLGKPRSRVTKVEYPLDYGADADADQHGQGAPTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAAEILLRCEEEIDRPELLSLVQIHHAQCLLLGSSGDHSADKELEPEELEEILLKMKDSMQSDIRQAAVWNTLGLILLRTGRLQNAISVLSSLLTIAPDNLDCLGNLGIAYLRSGNLELAEKCFQNLILKDQNHPAALINYAAVLMCKYGSIIAGAGANSGEGASEDQLIAANVAKECLLAAVKVEPKAAHVWANLANAYYLMGDCRSSSKCFEKAAKLEPNCMSTRYAVAVHQIKDAERYQDPSEQLSWAGNEMASILREGDSALIEHPIAWAGLAMVHKIQNEIAAAFETEHKGLMEMEERAVHILKQVFWLSISAFA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0981 495 MobiDBLite consensus disorder prediction 114 133 - -
Vvi17g0981 495 Pfam Tetratricopeptide repeat 365 398 IPR019734 GO:0005515
Vvi17g0981 495 SUPERFAMILY TPR-like 350 467 IPR011990 GO:0005515
Vvi17g0981 495 Pfam Tetratricopeptide repeat 252 311 - -
Vvi17g0981 495 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Vvi17g0981 495 Gene3D Tetratricopeptide repeat domain 199 326 IPR011990 GO:0005515
Vvi17g0981 495 SMART tpr_5 242 275 IPR019734 GO:0005515
Vvi17g0981 495 SMART tpr_5 151 184 IPR019734 GO:0005515
Vvi17g0981 495 SMART tpr_5 365 398 IPR019734 GO:0005515
Vvi17g0981 495 SMART tpr_5 276 309 IPR019734 GO:0005515
Vvi17g0981 495 Pfam Tetratricopeptide repeat 151 180 IPR013105 -
Vvi17g0981 495 SUPERFAMILY TPR-like 145 321 IPR011990 GO:0005515
Vvi17g0981 495 Gene3D Tetratricopeptide repeat domain 333 435 IPR011990 GO:0005515
Vvi17g0981 495 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
Vvi17g0981 495 MobiDBLite consensus disorder prediction 1 80 - -
Vvi17g0981 495 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 25 485 - -
Vvi17g0981 495 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
Vvi17g0981 495 Gene3D Tetratricopeptide repeat domain 138 198 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0981 148 397 Glycosyltransferase AT3G04240 23.221 7.35e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0981 - - vvi:100256924 911.753