Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0978 ATGGCGTTCATGCACCAAACATTTTCTTCTCCTTCTTGTCCTCTCTTCTATCGTAAACCCCATTTCTCCAAAACCCTAATAAGATTCTCTGCAACTCCCTCTAGTCCTGTTCCCACTCCTTCCTCTCACTCTTCATCCCCCATTTTCCTCCCTTTTCTCCAAGAACAAGACCGAACACTCCAACACCAACGACAGCAGAAGGAAGAAGAAGACGAGGATCCAAATGACCCAATTCTCAGATTCTTCAAGTCTCGCACTTCAACCCAAGACCCCAGATTCGAATCCAAATTCTCCCTCCAAAAGAATCGCCGCCCCTCCTGGCGTCTCGCCTCCACCACTGACCCCGAATCTGACGCCGAATTCGATGTCGAGGAGGAAAAAGAGCAAGTGGTTTCGGACTCATGTACGTCACTCCAGGGCATTTCTGGTGAAATTCTTCATTTTGCAAGGAATTTGCCTGAGAATTCAACGTTAGGGGAGGTTTTGGGGCCTTACGTGGGCAGAGTAGGTGAAAGAGAGTGTGTGGAAGTTTTGGGTTTGATGTGTGAGGAGGATCTTGTAATGGGTTGTTTGTATTTCTTTGAGTGGATGGGGTTGCAGGAGCCGTCGCTCGTTACCGCTCGAGCCTGCTCGCTTTTGTTTCCGATGTTGGGGAGAGCAGGCATGGGTGACGACTTAATGGTTTTGCTTAGGAATCTACCGAAGACGAGGCAATTCAGGGATGTTCGTATTTATAATTCAGCAATTTCAGGCTTGTCGTCCTGTGGGAGGTATGATGATGCTTGGAAGGTGTATGACGAAATGGAAACAAATAATATCCGTCCAGATCATGTCACATGTTCTATTATGATTACAGTCATGAGGAAAGACGGGCATAGTGCCAAAGATGCTTGGGAGTTCTTTCAGAGAATGAACAGGAAAGGAGTTAAATGGAGTTTGGAAGTCTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAATGAGGCCCTTATAATCCAATCAGAGATGGAGAAGAAAGGGATCTCTTCAAATGCTATTGTGTATAACACTCTGATGGATGCATACAGTAAATCCAACCGGGTTGAAGAAGCTGAAGGTCTCTTTGGTGAGATGAAGGCAAAGGGTGTTATGCCTACATCTGCCACCTATAACATTCTAATGGATGCATACAGCCGAAGAATGCAGCCCGAAATCATTGAGAATTTACTGTTGGAGATGCAGGATATGGGCTTGGAGCCAAATGTCAAATCATATACATGCCTAATTAGTGCATATGGTAGACAGAAGAAGATGAGTGACATGGCTGCAGATGCATTCTTGAGGATGAAGAAAGTAGGTATCAAACCCACTTCACATTCTTATACAGCTCTTATCCATGCATATTCAGTCGGTGGCTGGCATGAGAAAGCTTATACAGCATTTGAGAACATGAAAAGGGAAGGAATAAAACCTTCCATAGAAACTTATACTGCTCTACTAGATGCATTTAGGCGTGCTGGTGATACCCAAACACTGATGAAAATTTGGAAATTGATGCTCAGTGACAAAATTGAAGGGACACGGGTGACCTTCAACATTCTTCTTGATGGATTTGCTAAACAAGGACACTACATGGAAGCAAGAGATGTGATTTTTGAATTTGGGAAGATTGGTTTCCAACCAACAGTGATGACATATAATATGCTGATGAATGCTTATGCACGGGGAGGGCAACACTCAAGGTTGCCACAGCTATTGAAAGAGATGACGTCCCTCAATCTAAAACCTGATTCTATTACTTATTCAACAATGATCTATGCTTATGTTCGTGTTCGTGATTTCAAGAGGGCATTCTTTTATCATAAGCAGATGGTGAAAAGTGGACAAGTACCAGATCCCCAATCTTATCAGAAGCTGAGGTCAATTTTAGATGTAAAAGCTGCAACAAAGAATAGGAAGGACAGGAGTGCTATACTCGGGATTGTTAATAGCAACATGGGTTTGTTGAAACCTAAGAAAGGAAAGAAAGACGAGTTCTGGAAGAACAAGAAGGGGCAAAGGAGAATTCAAAGTTTTGCTCACGATGGATAG 2079 0.4348 MAFMHQTFSSPSCPLFYRKPHFSKTLIRFSATPSSPVPTPSSHSSSPIFLPFLQEQDRTLQHQRQQKEEEDEDPNDPILRFFKSRTSTQDPRFESKFSLQKNRRPSWRLASTTDPESDAEFDVEEEKEQVVSDSCTSLQGISGEILHFARNLPENSTLGEVLGPYVGRVGERECVEVLGLMCEEDLVMGCLYFFEWMGLQEPSLVTARACSLLFPMLGRAGMGDDLMVLLRNLPKTRQFRDVRIYNSAISGLSSCGRYDDAWKVYDEMETNNIRPDHVTCSIMITVMRKDGHSAKDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMLSDKIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRLPQLLKEMTSLNLKPDSITYSTMIYAYVRVRDFKRAFFYHKQMVKSGQVPDPQSYQKLRSILDVKAATKNRKDRSAILGIVNSNMGLLKPKKGKKDEFWKNKKGQRRIQSFAHDG* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0978 692 MobiDBLite consensus disorder prediction 60 78 - -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 385 418 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 420 453 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 525 549 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 244 276 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 491 521 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 595 628 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 561 594 IPR002885 -
Vvi17g0978 692 NCBIfam pentatricopeptide repeat 349 382 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 452 IPR002885 -
Vvi17g0978 692 Coils Coil 53 73 - -
Vvi17g0978 692 Gene3D Tetratricopeptide repeat domain 513 687 IPR011990 GO:0005515
Vvi17g0978 692 Gene3D Tetratricopeptide repeat domain 166 331 IPR011990 GO:0005515
Vvi17g0978 692 Pfam PPR repeat 318 344 IPR002885 -
Vvi17g0978 692 MobiDBLite consensus disorder prediction 669 692 - -
Vvi17g0978 692 Pfam PPR repeat family 557 605 IPR002885 -
Vvi17g0978 692 Pfam PPR repeat family 241 286 IPR002885 -
Vvi17g0978 692 Pfam PPR repeat family 347 394 IPR002885 -
Vvi17g0978 692 Pfam Pentatricopeptide repeat domain 405 464 IPR002885 -
Vvi17g0978 692 Pfam Pentatricopeptide repeat domain 477 532 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 311 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vvi17g0978 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 292 547 - -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Vvi17g0978 692 Gene3D Tetratricopeptide repeat domain 412 512 IPR011990 GO:0005515
Vvi17g0978 692 Gene3D Tetratricopeptide repeat domain 332 411 IPR011990 GO:0005515
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi17g0978 692 MobiDBLite consensus disorder prediction 55 78 - -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Vvi17g0978 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0978 227 653 Glycosyltransferase AT1G05670 26.698 6.80e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0978 - - vvi:100241526 1360.9