Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0976 ATGGCTCTTGTCGTCGAGAAGACCACCTCCGGCCGAGAGTACAAGGTCAAGGACATGTCTCAGGCCGACTTCGGCCGCCTCGAAATCGAGCTCGCAGAAGTCGAAATGCCTGGACTCATGGCTTGCCGTACCGAATTCGGACCCCAGCAACCCTTCAAAGGTGCTCGTATCACTGGATCTCTCCACATGACCATACAGACCGCCGTCCTCATCGAAACCCTAACCGCCTTGGGTGCCGAGGTCCGCTGGTGCTCATGCAACATCTTCTCAACTCAAGACCACGCCGCAGCAGCCATTGCCCGCGACTCTGCCGCCGTATTCGCCTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACCGAGCGTGCCCTCGATTGGGGCCCCGGCGGTGGCCCTGATCTGATTGTCGACGACGGTGGCGATGCCACGCTGTTGATCCACGAAGGAGTGAAGGCTGAGGAGGAGTACGAGCGATCTGGGAAGCTTCCGGACCCTGCTTCCACTGACAATGCTGAGTTCCAGATCGTGCTTGGAATCATCAAGGAAGGGCTGTCGGTTGATCCATGCAAGTATCGGAAGATGAAGGAGAGATTGGTTGGAGTTTCGGAAGAGACAACCACCGGTGTGAAGAGGCTGTACCAGATGCAGGCAAATGGAACTCTTTTGTTTGCTGCTATCAATGTCAACGATTCTGTTACCAAGAGCAAGTTTGACAACTTGTATGGATGCCGACACTCCCTCCCCGATGGTCTCATGAGAGCCACTGATGTCATGATTGCTGGCAAGGTTGCTGTGGTCTGTGGGTATGGAGATGTTGGGAAGGGCTGTGCTGCCGCGCTCAAGCAGGCTGGTGCCCAGGTTATCGTGACTGAGATTGATCCAATTTGTGCTCTCCAAGCCCTAATGGAAGGTATCCCAGTCCTAACCTTGGAAGATGTAGTCTCAAAGGCTGACATCTTTGTGACCACCACTGGGAACAAAGACATCATCATGGTTCACCACATGAAGCAGATGAAGAACAATGCAATTGTTTGTAACATTGGCCACTTTGACAATGAGATTGATATGCTTGGTCTGGAAACCTACCCTGGTGTTAAGCGCATCACAATCAAGCCCCAAACTGATCGATGGGTTTTCCCAGAAACCAACAGTGGCATCATTATTCTCGCTGAGGGACGACTGATGAACTTAGGATGTGCAACTGGGCATCCCAGCTTTGTGATGTCATGCTCGTTTACAAACCAGGTGATTGCCCAGCTTGAGCTCTGGAAGGAGAAGGCAACGGGCAAGTATGAGAAAAAGGTGTACGTGCTGCCCAAGCATCTGGATGAGAAGGTTGCAGCTCTTCACCTTGGAAAGCTTGGTGCTAAGCTCACCAAGCTTAGCCCCGAGCAAGCTGCTTACATTAGTGTCCCTGTGGAAGGTCCTTACAAGCCCACTCACTACAGGTACTAG 1458 0.5281 MALVVEKTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMACRTEFGPQQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEYERSGKLPDPASTDNAEFQIVLGIIKEGLSVDPCKYRKMKERLVGVSEETTTGVKRLYQMQANGTLLFAAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGAQVIVTEIDPICALQALMEGIPVLTLEDVVSKADIFVTTTGNKDIIMVHHMKQMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKATGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSPEQAAYISVPVEGPYKPTHYRY* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0976 485 PANTHER ADENOSYLHOMOCYSTEINASE 6 485 IPR000043 -
Vvi17g0976 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Vvi17g0976 485 Gene3D - 243 404 - -
Vvi17g0976 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Vvi17g0976 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Vvi17g0976 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Vvi17g0976 485 SMART AdoHcyase_2 13 484 IPR000043 -
Vvi17g0976 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Vvi17g0976 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Vvi17g0976 485 CDD SAHH 23 473 IPR000043 -
Vvi17g0976 485 Gene3D - 15 485 IPR042172 -
Vvi17g0976 485 NCBIfam adenosylhomocysteinase 14 477 IPR000043 -
Vvi17g0976 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 361 485 - -
Vvi17g0976 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Vvi17g0976 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Vvi17g0976 485 PIRSF SAHH 2 485 IPR000043 -
Vvi17g0976 485 FunFam Adenosylhomocysteinase 242 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0976 Vvi-Chr17 11735950 11737947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0976 K01251 - vvi:100265604 966.066