Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0975 ATGCCAATTAATCGGAAGTATAACTTAAGCTTGCTTCTTCAAACCCTTCGAGAAGAACTTCGCTCCAAACATAACTACAAAGTTCTATTTGAATATGTGATGCTTGCAGGAGTTAACGACAGCCTTGAGGATGCAAGGAGGCTAATTGATCTTGTTCAGGGCATTCCTTGCAAGGTCAATCTTATATCGTTTAATCCCCATTGTGGATCCCAGTTTAAGCCAACCAGTGAAGAGAAAATAATTGAGTTCCGAAATATTTTGGCGGAAGCAGGGTGTATTGTTTTCTTGCGACCTAGTAGAGGGGATGACCAAATGGCTGCCTGTGGTCAACTTGGGAAGCCTGGCCAAGTCCAGGCTCCCTTGCTTCAGGTGCCTGCTAAATTCCAATCAGCCCTGACCTAA 402 0.4428 MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQLGKPGQVQAPLLQVPAKFQSALT* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0975 133 ProSiteProfiles Radical SAM core domain profile. 1 103 IPR007197 GO:0003824|GO:0051536
Vvi17g0975 133 Gene3D Aldolase class I 1 119 IPR013785 -
Vvi17g0975 133 PANTHER 23S RRNA METHYLTRANSFERASE 1 119 IPR040072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0975 Vvi-Chr17 11716445 11716988 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0975 K06941 - vvi:100258648 262.692