Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0969 ATGCCCATAAGGAACCTTCAACTTCTTCATTTATTATCACTTGTTTTGTTCCTGCACTCCCATCTCTTATCTTCCATTTGGTTATTCTTTCATTCTTCTATATATACCTGGTTCAGAGTCTCTCAGTTGCCATCCAAGTATCAGAAAATGAAGCGGTTTTTCGTGGTTGCTCTCTCATTGGTTTTGGTTGTTGGGATTGTTGAGAGTTTTGATTTCCATCAGAAAGAGTTGGAGACTGAAGAAAGTTTGTGGAATTTGTATGAGAGGTGGAGGAGCCATCACACTGTGTCTAGGAGTCTGGATGAGAAGCACAAGCGCTTTAATGTGTTCAAGGAGAATGTGAATTTTGTCCATGAGTTCAACAAGAAGGATGAGCCTTACAAGTTGAAACTCAACAAGTTTGCAGACATGACTAACCATGAGTTCAGAAGCACTTATGCCGGCTCAAAGGTGAACCACCACAGGATGTTCCGAGGGAGCCAACATGCAGCTGGGAGCTTCATGTATGAGAAGGTAAAGAGTGTCCCACCATCTGTTGATTGGAGGAAGAAAGGTGCTGTCACACCCATCAAGGATCAAGGCCAATGCGGTAGTTGCTGGGCATTTTCAACGGTTGTGGCGGTTGAAGGAATCAACCATATTAAAACAAACAAACTAGTTTCTTTGTCTGAGCAAGAGTTGGTGGACTGTGACACTTCAGAAAACCAGGGATGCAATGGAGGCCTAATGGGATATGCCTTTGAATTCATCAAAGAAAAAGGGGGTATAACAACAGAGCAGAGCTACCCTTACACAGCTGAAGATGGAACTTGTGATGTGTCAAAGGTGAATTCGCCAGTAGTGTCTATTGATGGCCATGAAACCGTACCTCCTAACAATGAGGACGCTTTGCTAAAAGCAGCTGCAAACCAACCGATATCCGTTGCCATAGATGCTGGGGGTTCTGCCTTCCAGTTCTACTCTGAGGGGGTGTTTGCAGGAAGATGTGGTACAGACCTAGATCATGGGGTGGCAATTGTGGGCTATGGAACAACTCTTGATGGGACCAAATACTGGATTGTGAAGAACTCATGGGGAACTGATTGGGGAGAGAACGGTTATATCAGGATGAAGCGAGGCATCTCTGCTAAGGAAGGACTCTGCGGTATAGCAGTGGAAGCTTCATATCCCATCAAGAACTCCTCAACAAACCCTGTGGGAGCTCCATCCTCTCTCAAGGATGAGCTCTAA 1230 0.4496 MPIRNLQLLHLLSLVLFLHSHLLSSIWLFFHSSIYTWFRVSQLPSKYQKMKRFFVVALSLVLVVGIVESFDFHQKELETEESLWNLYERWRSHHTVSRSLDEKHKRFNVFKENVNFVHEFNKKDEPYKLKLNKFADMTNHEFRSTYAGSKVNHHRMFRGSQHAAGSFMYEKVKSVPPSVDWRKKGAVTPIKDQGQCGSCWAFSTVVAVEGINHIKTNKLVSLSEQELVDCDTSENQGCNGGLMGYAFEFIKEKGGITTEQSYPYTAEDGTCDVSKVNSPVVSIDGHETVPPNNEDALLKAAANQPISVAIDAGGSAFQFYSEGVFAGRCGTDLDHGVAIVGYGTTLDGTKYWIVKNSWGTDWGENGYIRMKRGISAKEGLCGIAVEASYPIKNSSTNPVGAPSSLKDEL* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0969 409 SUPERFAMILY Cysteine proteinases 79 391 IPR038765 -
Vvi17g0969 409 SMART Inhibitor_I29_2 87 142 IPR013201 -
Vvi17g0969 409 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 76 385 IPR013128 GO:0008234
Vvi17g0969 409 FunFam Senescence-specific cysteine protease SAG39 67 392 - -
Vvi17g0969 409 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 333 343 IPR025660 -
Vvi17g0969 409 PRINTS Papain cysteine protease (C1) family signature 351 357 IPR000668 GO:0006508|GO:0008234
Vvi17g0969 409 PRINTS Papain cysteine protease (C1) family signature 193 208 IPR000668 GO:0006508|GO:0008234
Vvi17g0969 409 PRINTS Papain cysteine protease (C1) family signature 335 345 IPR000668 GO:0006508|GO:0008234
Vvi17g0969 409 Pfam Cathepsin propeptide inhibitor domain (I29) 87 142 IPR013201 -
Vvi17g0969 409 Pfam Papain family cysteine protease 175 391 IPR000668 GO:0006508|GO:0008234
Vvi17g0969 409 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 351 370 IPR025661 -
Vvi17g0969 409 SMART pept_c1 175 391 IPR000668 GO:0006508|GO:0008234
Vvi17g0969 409 CDD Peptidase_C1A 176 390 IPR039417 -
Vvi17g0969 409 Gene3D Cysteine proteinases 61 393 - -
Vvi17g0969 409 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 193 204 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0969 Vvi-Chr17 11632961 11634750 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0969 K16292 - vvi:100250141 794.653