Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0967 ATGAGTGAGAATCAGGAGCTTAAAGCACAGCTACAAGAGATGACTGTGAAAGCTAAGAATATAGAGGCTGAAAATAAGATGTTGATTGATCGCTGGATGTTGCAAAAGATGCAGGAGGCTGAACACCTGAATGAGGCTAATGCTCTTTATCAAGATTTTAAAGATCAGCTCAAGGCCAGTGGTATAGCACAACTTGCTCGGCAGCAAGTGGATGGTGTGGTACGCCAAAGTGAAGAAGGTGCCCAGTACTATGGGGAATCAACTGTTCCGAATACATGTAAGCACAGGATCCATGCCCATGAGGGTGGCTGTGCAGCTATATTGTTTGAGTACAACTCTGGCAATTTGATTAGTGGGGGACATGACCGGGCAGTCAAAATGTGGGATACAAACACTGGATCATTAACTCGCACTCTTTATGGTTGTGTGGGCTCTGTTCTTGATCTTGCTATTACACATGATAACAGATCCATAATTGCTGCAAGCAGCTCAAATAACTTGTGTGTATGGGATGTGAACTCAGGTCGGATCCGTCATACTCTTACAGGCCACATGGATAAAGTTTGTTCTGTAGATGTGAGCAAAATTTCAAGTCGTCATGTTGCAAGTGCAGCTTATGACCGTACTATAAAAGTTTGGGATTTGCAGAAAGGTTATTGTATCAACACTATCATTTTCCACAGCAACTGCAATGCACTTTGCTTCAGCACAGATGGACAAACCATTTGTTCAGGTCATGTTGATGGAAATCTTCGATTGTGGGATATTCAGACAGGAAAACTACTTAGTGAAGTTGCTGCTCATTCACTTGCTATTACATCTATCTCTTTGTCTCGAAATGGGAGTGTGGTATTAACAAGTGGGAGAGACAACTTGCATAATTTATTTGATATGCGGTCTCTGGAAGTTTGTGGCACATTAAGAGCGAATGGAAACAGGGTGGCATCTAATTGGAGCCGATCCTGTATAAGTGCAGATGACAACTATGTTGCTGCTGGATCCACTGATGGATCTGTGCATATTTGGTCAATACTAACAGCAGAAATAGTGAGTACTCTAAAGGAACACACTGCTTCAGTTCTAAGTTGTTCATGGAGTGGACTTGGAAAACCTCTAGCCTCCTCTGATAAGAGTGGAATTGTTTATACATGGACATGA 1158 0.4223 MSENQELKAQLQEMTVKAKNIEAENKMLIDRWMLQKMQEAEHLNEANALYQDFKDQLKASGIAQLARQQVDGVVRQSEEGAQYYGESTVPNTCKHRIHAHEGGCAAILFEYNSGNLISGGHDRAVKMWDTNTGSLTRTLYGCVGSVLDLAITHDNRSIIAASSSNNLCVWDVNSGRIRHTLTGHMDKVCSVDVSKISSRHVASAAYDRTIKVWDLQKGYCINTIIFHSNCNALCFSTDGQTICSGHVDGNLRLWDIQTGKLLSEVAAHSLAITSISLSRNGSVVLTSGRDNLHNLFDMRSLEVCGTLRANGNRVASNWSRSCISADDNYVAAGSTDGSVHIWSILTAEIVSTLKEHTASVLSCSWSGLGKPLASSDKSGIVYTWT* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0967 385 Coils Coil 4 31 - -
Vvi17g0967 385 CDD WD40 93 384 - -
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 385 - -
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 138 IPR001680 GO:0005515
Vvi17g0967 385 FunFam Autophagy-related protein 16 isoform A 228 385 - -
Vvi17g0967 385 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Vvi17g0967 385 Pfam WD domain, G-beta repeat 322 343 IPR001680 GO:0005515
Vvi17g0967 385 Pfam WD domain, G-beta repeat 93 129 IPR001680 GO:0005515
Vvi17g0967 385 Pfam WD domain, G-beta repeat 177 214 IPR001680 GO:0005515
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 300 IPR001680 GO:0005515
Vvi17g0967 385 FunFam Autophagy-related protein 16 isoform A 85 227 - -
Vvi17g0967 385 SMART WD40_4 174 214 IPR001680 GO:0005515
Vvi17g0967 385 SMART WD40_4 346 385 IPR001680 GO:0005515
Vvi17g0967 385 SMART WD40_4 90 129 IPR001680 GO:0005515
Vvi17g0967 385 SMART WD40_4 258 297 IPR001680 GO:0005515
Vvi17g0967 385 SMART WD40_4 132 171 IPR001680 GO:0005515
Vvi17g0967 385 SMART WD40_4 300 343 IPR001680 GO:0005515
Vvi17g0967 385 SMART WD40_4 217 255 IPR001680 GO:0005515
Vvi17g0967 385 ProSitePatterns Trp-Asp (WD) repeats signature. 116 130 IPR019775 -
Vvi17g0967 385 ProSitePatterns Trp-Asp (WD) repeats signature. 201 215 IPR019775 -
Vvi17g0967 385 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Vvi17g0967 385 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Vvi17g0967 385 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 385 IPR001680 GO:0005515
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 180 IPR001680 GO:0005515
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 134 - -
Vvi17g0967 385 ProSitePatterns Trp-Asp (WD) repeats signature. 242 256 IPR019775 -
Vvi17g0967 385 SUPERFAMILY WD40 repeat-like 89 384 IPR036322 GO:0005515
Vvi17g0967 385 Gene3D - 229 385 IPR015943 GO:0005515
Vvi17g0967 385 PANTHER AUTOPHAGY PROTEIN 16-LIKE 3 357 IPR045160 GO:0000045
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 352 IPR001680 GO:0005515
Vvi17g0967 385 Gene3D - 1 228 IPR015943 GO:0005515
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 264 IPR001680 GO:0005515
Vvi17g0967 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 223 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0967 156 384 Miscellaneous Gene Families AT5G08390 23.377 5.29e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0967 K17890 - vvi:100245008 770.77