Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0965 ATGGAGGACCCATCATTGCTCGCAACTGCCGATTCTACTTTACCGGAGCAGATACTCCCCACTTCCGACACAAGTATTAACTCTGAAACCCCTTCTACCTCCACACTCTCACAGGAAACTACAAGCTTCACTGCTAGTCTACAAAGTCGCTCTCCCGAATCCCGAAACGTAGTCGTTTCTCACCTCTGCGTCTCCTCCCTCAGAACCTTGACCCCTCATATCAGCTGCCTCGCCGTCCATGAAAAGTTCCTCTATGCTGCCTCCGGCGAAGATATCCACGTCTACGATTTAACTACCCACACCCACATCGACACTTTCAGAAACAACAAGCCCACTTCTGGTTCAGTCAAGTCCATCGCATTCCACGAAGGAAAGATCTTCACCGCTCATCAGGATTCCAAGATTAGAGTGTGGCGGATCACGGCCTCCAAACGCCACCGCCTTATCTCTACTCTCCCCACCGTTAAAGACTTCTTGCGCCGCTCCATCCTCCCGAAGAACTACGTCCGGGTCCGGCGGCACAAGAAGCGGCTCTGGATCGAGCACAACGACGCCGTTTCGGGCCTGGCCATGGCCGAGGGTTTCATGTACTCAGCTTCGTGGGACAAGAGCTTCAAGATATGGAGAACATCGGACCTCCGCTGCGTCGAGTCTGTCAAAGCCCACGACGACGCTGTCAACGCCGTCGCCGTCTCCGCCTCTGGCACCGTCTATACTGCCTCCGCAGACGGGTGCATCAGGGTTTGGGAAAGAACCGGAGAAGAGAGAACCCACACGCTGATAACCACCCTAGAGAAGCACAAGTCTACGGTGAATGCGCTCGCATTGAGCGGGGATGGATCCTCACTGTTCTCCGGCGGTTGTGAGAGTTGGATCTTGGTCTGGGAGAGGGAAGAGAGCGCCAATCACATGGCCGCGACACAAGCCCTGGTGGGCCACACTGGACCCGTACTATGCTTAATCACCGTCAACAACATGATAATCAGTGGGTCCTCTGATCGGACGGTCAGGATTTGGCGCCCTGGGGTGGATGGAAGATATCACTGTACACTAATGTTGGAGGGACATGTAAAGCCGGTGAAGTCGTTGGTGGCAGTTTCCAGTGGCACCTCGTACGACGTCGTATCGATTTGTAGCGGAAGCCTAGATGGCGAGATTAAGGTTTGGGAGGTCTCAGCTGCTGCGTTTGATGCTAAAAGCTGA 1203 0.5436 MEDPSLLATADSTLPEQILPTSDTSINSETPSTSTLSQETTSFTASLQSRSPESRNVVVSHLCVSSLRTLTPHISCLAVHEKFLYAASGEDIHVYDLTTHTHIDTFRNNKPTSGSVKSIAFHEGKIFTAHQDSKIRVWRITASKRHRLISTLPTVKDFLRRSILPKNYVRVRRHKKRLWIEHNDAVSGLAMAEGFMYSASWDKSFKIWRTSDLRCVESVKAHDDAVNAVAVSASGTVYTASADGCIRVWERTGEERTHTLITTLEKHKSTVNALALSGDGSSLFSGGCESWILVWEREESANHMAATQALVGHTGPVLCLITVNNMIISGSSDRTVRIWRPGVDGRYHCTLMLEGHVKPVKSLVAVSSGTSYDVVSICSGSLDGEIKVWEVSAAAFDAKS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0965 400 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Vvi17g0965 400 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Vvi17g0965 400 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Vvi17g0965 400 Gene3D - 256 399 IPR015943 GO:0005515
Vvi17g0965 400 Gene3D - 40 160 IPR015943 GO:0005515
Vvi17g0965 400 Pfam WD domain, G-beta repeat 310 339 IPR001680 GO:0005515
Vvi17g0965 400 Pfam WD domain, G-beta repeat 214 249 IPR001680 GO:0005515
Vvi17g0965 400 Pfam WD domain, G-beta repeat 349 389 IPR001680 GO:0005515
Vvi17g0965 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vvi17g0965 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 250 - -
Vvi17g0965 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 339 - -
Vvi17g0965 400 SMART WD40_4 99 139 IPR001680 GO:0005515
Vvi17g0965 400 SMART WD40_4 303 340 IPR001680 GO:0005515
Vvi17g0965 400 SMART WD40_4 60 96 IPR001680 GO:0005515
Vvi17g0965 400 SMART WD40_4 257 296 IPR001680 GO:0005515
Vvi17g0965 400 SMART WD40_4 172 209 IPR001680 GO:0005515
Vvi17g0965 400 SMART WD40_4 346 390 IPR001680 GO:0005515
Vvi17g0965 400 SMART WD40_4 212 250 IPR001680 GO:0005515
Vvi17g0965 400 Gene3D - 167 255 IPR015943 GO:0005515
Vvi17g0965 400 MobiDBLite consensus disorder prediction 10 50 - -
Vvi17g0965 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 259 IPR001680 GO:0005515
Vvi17g0965 400 SUPERFAMILY WD40 repeat-like 73 392 IPR036322 GO:0005515
Vvi17g0965 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 339 IPR001680 GO:0005515
Vvi17g0965 400 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 28 393 IPR045182 -
Vvi17g0965 400 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Vvi17g0965 400 MobiDBLite consensus disorder prediction 1 50 - -
Vvi17g0965 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Vvi17g0965 400 CDD WD40 66 390 - -
Vvi17g0965 400 FunFam BnaA09g28200D protein 169 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0965 Vvi-Chr17 11592928 11594130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0965 182 391 Acyl Lipid Metabolism Gene Families AT3G18860 30.374 8.80e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0965 - - vvi:100246752 776.163