Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0962 ATGGCAGCCACTGCCCAGCCCAACAGAGTGCAGCAACAGCAGCAAGTAGTTAAGGGTAGGGACCATCCAAAGTTCTTGCGGATGAGCGATGACACTACAATGATGAAGCAAATTCAGGCAACTCATACCCCAGATGGTCGAGAGGTTGAGGTCAAGCCTATTGTCCAAGTCATTGAGGACATCCTGAATCATGCCACTCCCGCCATTGATGGGACCCTATATGGCAACCCTCCACACCTTGAGGCGTTGGAGGACAGGAGCAGTCAGGATGGCCTCCATGGCATCCTAGAAGAACTGGCTTATACTATACAGAAGCTTTCATGCGAGTTATCATGCAAATGCTCGGGTGGAGGGGACGCTCATGCGACGACTATGGCTGTATTCAACATGCTTTCCCACTATTCCTGGGATGCAAAGGTGGTGCTATCCCTGGCTGCATTCGCTGCAAACTATGGGGAGTTCTGGCTGGTCATTCAGCTTTACGCTACAAACCCTCTTGCAAAGTCAGTGGCTCTCCTCAAGCAATTGCCTGACATCATAGAACATGGAAACTCCTTGAAATCCCGGTTTGATGCAGTCACCAAACTTATCAAGGTAATGTTGGACGTGACCAAGAGTATCATTGAGTTCAAGGAGCTACCATCTCTTTACATTTCACCAGACATGCCTCCAATGTCAAGTACCATGGCTCATATCCCCACTGCTGCCTACTGGACCATTCGAGGCATTGTAGCTTGTGCATCCCAGATCATAAGCCTTATAGGCACGAGCAATGAGTACACCTCATGGACAACCGAATCATGGGAACTGTCAACCCTGGCTCATAAGGTCAGCAGCATACACGAGCACCTCATACAGCAACTAATTATCTGCCATCAGCATATCGAGGAGAAGAAACAGTTTGAAAGTTACAACAATCTGGTGCGCATTTTTGAAATGCCCCACCTCGACAACCAGAAGGTTTTGAAGACACTGATTTATGCCAAGGAAGATATACAACCACTGCTGCAAGGCAACACCAAGGTTAATATTGAAATACTAAGGCGAAAGACTGTGCTATTGCTAATATCAGATCTTGATCTTTTGCATGAGGAGATTGTGATTCTCCATAAATTTTATAGAGAACAGATAAAGAGTGATGTTGAGTATGAGGTGGTGTGGCTTTCAGTGGTGGACAGGTCAAAACCATTGACTGAAGAGAATCAAAACAAGTTTCATGAACTGCAAAAGGAGATGCCATGGTACACACTGCTACACCCTTCATTGCTTGAGCCAGCAGTGGTCAGATACATTAAAGAGGTGTGGCATTTCACCAAGAAGGCAATATTGGTGGTATTGGATCTACAAGGAAAAGTAGTATGCCGAAATGCACTCCACATGATGTGGATATGGGGAAATACTGCTTATCCTTTCACTAATTCGAAAGAGGAATCACTTTGGAAGGAGGAAACTTGGAGACTGAAGCTGCTGGTAGATGATATTGATGCAACCATATTTGCTTGGGTGAACCAGGGGAAATACATTTGCATGTATGGAGGAGTGAACTCTGACTGGATCCTGAACTTTAACACAGCAGCACGGGAAGTTGCAAAGGCTGCAGGCATTCAACTAGAAATGGTTTATGTGGGAAAGAGCAACGCCAAAGAGCAAGTGCGGAAGACCATTACATTTATCGATTCTCGAAGTCTTGGTTACTGCTGGACTGACCCCACTAACATTTGGTTCTTCTGGACTCGAATGGAGAGCATGTTGTACTCGAAGACACAACATGGCAAGACCATTGAGAATGATTCTATATTCGCAGGGGTCCTAACGATGCTTAGCTTTGATGGCAGTGATCAAGGATGGTCTGTGATCTGCCACGGACCTACGGAGATGGCCAAAGCCAAGGGAGACATGATTTTAAAATGCTTTACAGAGTACAGCGATTGGAGCGACAACGTTCAGCAAAATGGTTTCATGCCCGCACTGAATGAGCACCTCCAAAAACTTCACACTCCAGAACATTGCAACCGCCTCATCCTTCCTGGGATCAATGGAGACATCCCAGAAAAGGTGGTCTGTGCAGAGTGCGGCCGCCCAATGGAGAAGTACTTTATGTACCGCTGCTGTACTGATTAA 2121 0.462 MAATAQPNRVQQQQQVVKGRDHPKFLRMSDDTTMMKQIQATHTPDGREVEVKPIVQVIEDILNHATPAIDGTLYGNPPHLEALEDRSSQDGLHGILEELAYTIQKLSCELSCKCSGGGDAHATTMAVFNMLSHYSWDAKVVLSLAAFAANYGEFWLVIQLYATNPLAKSVALLKQLPDIIEHGNSLKSRFDAVTKLIKVMLDVTKSIIEFKELPSLYISPDMPPMSSTMAHIPTAAYWTIRGIVACASQIISLIGTSNEYTSWTTESWELSTLAHKVSSIHEHLIQQLIICHQHIEEKKQFESYNNLVRIFEMPHLDNQKVLKTLIYAKEDIQPLLQGNTKVNIEILRRKTVLLLISDLDLLHEEIVILHKFYREQIKSDVEYEVVWLSVVDRSKPLTEENQNKFHELQKEMPWYTLLHPSLLEPAVVRYIKEVWHFTKKAILVVLDLQGKVVCRNALHMMWIWGNTAYPFTNSKEESLWKEETWRLKLLVDDIDATIFAWVNQGKYICMYGGVNSDWILNFNTAAREVAKAAGIQLEMVYVGKSNAKEQVRKTITFIDSRSLGYCWTDPTNIWFFWTRMESMLYSKTQHGKTIENDSIFAGVLTMLSFDGSDQGWSVICHGPTEMAKAKGDMILKCFTEYSDWSDNVQQNGFMPALNEHLQKLHTPEHCNRLILPGINGDIPEKVVCAECGRPMEKYFMYRCCTD* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0962 706 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0962 706 Pfam Sieve element occlusion C-terminus 474 705 IPR027944 -
Vvi17g0962 706 MobiDBLite consensus disorder prediction 1 18 - -
Vvi17g0962 706 Pfam Sieve element occlusion N-terminus 29 315 IPR027942 -
Vvi17g0962 706 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 706 IPR039299 GO:0010088
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0962 Vvi-Chr17 11508785 11511540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0962 - - vvi:100243366 1391.71