Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0956 ATGACTCCCATGCACTTCGGATTCAACCAAACACACTCCAGTATAAATTTTAGCTTCTTCCTCTTCTTCTCAATGCCCATCCCTCTCTCAATGGAGGACAAGAAACACTTTCCTCTTGCTTTCAAGCTCATGGTTGTTGTGCTTTTTTTGTTATTGCATTGTGTTTGTTTTTGCACTGCAGTTGCAGGTTCCTCAGGAGGGAAGAAAGGGAAATGGCAGCTTCTCCTGAACAACACTGGTGTGGTGGGTATGCATATGGCCTTAACCCATCATGGCACCGTAATAATATTCGATCAAATTGGAGTGGGCCAGTCGGGTTATGGACTCCGTCGAAGGTATAATGGAACAAGGTGCATGAATACTCAGCATGATTTAACAGACTGGTCCTGCTTTGCTCACTCTGTTGAGTATGATATGTCACTTAACAAAGTTAGGCCTCTAAGGCTTGACACTGATCCCTGGTGCTCTTCGGGTTCCTTCTTGAGCAATGGAACCCTTCTTCAGACGGGTGGATATGGCAGGGGTTCTCGTAGAATCCGGTACTTCCGGCCTTGTGAGAATGGCCACTGTGATTGGAGGCAGTCAAAGACATTGCTGTCTGATGACCGATGGTATGCTTCAAGCCAAATACTCCCAGAGAAGGATAGGGCTATCGTTGTTGGGGGAAGACAAGTTTTTAGTTACGAATTCGTGCCGAAACTGCACTCGAACCACAGATCCTTTGATCTTCCCTTCTTGCACCGGACTACAAACAAAAATGAAGGGGGAAACAATCTCTACCCTTTTGTTCACCTCTCCTCAGATGGCAACTTGTTCATTTTCGCCAACCGGGATTCAATCCTCTTCAACTATAAACGAAACAGGGTGGTGAAGAGCTTCCCTCGAATTCCTGGTGCTGGTTCAAGGAACTATCCAAGCAGTGGGTCATCGGTGATTCTCCCTTTAGACCACGGAGACCGGTTCCACAAGGTGGAAGTCATGGTGTGTGGAGGTGCTGCGTCAGGAGCTCATCAAGCTGCAGAACAGGGCAAGTTCTTGAAGGGTTTGAGCTCTTGTGGGAGGATGGTGATTACAGGAAATACACACAAGTGGAACATGGAAAACATGCCAGGACCTCGTCTCCTAAACGACATGCTCATCCTCCCAACTGGGGATATTCTCATCATCAATGGTGCAAAACGTGGTTGTGCTGGATGGAAGAATGCTGCAGATCCTTCTCTCCAACCTTACCTATACAAACCCAAGAAAACCCTTGGAAGGAGGTTTTCAGTCTTGAAGTCCACGAAAATAGCAAGAATGTATCACTCCTCAGCCATTCTCACACCTGATGGAAGAGTTCTAGTTGCTGGGAGTAACCCCAACAACAAGTACACCTTCAGAAATGTGAGGTACCCAACTGAGCTGAGATTACAGGCCTTTGTTCCAGCCTACATGGACAGACAATACCACAACACAAGGCCAGGCAATGTGTCAATACACTATGGAAGTGGCACTAATGGAGGAGTGAGGTATGGCGAAGGCTTTTCTGTTCGATTCTGGCTGGGGAAGAAGCCGAGCAAGACAGTGGAGTTCAGTGCATATGCACCACCATTCACGACACACTCCATTTCAATGAACCAAAGGATGCTGAAACTCAGGTGCAAGAGCATGGTGAGGGGTGAGGGTGGTTGGATCAATGCAGCTCTGGAGGCTCCTCCATCTCCTAATGTTGCACCCTCTGGTTATTACATGCTTACAGTCATCAATGGGGGGATCCCCAGTATTTCTCAGTGGATTAGGATCATACATGCTTGA 1794 0.4732 MTPMHFGFNQTHSSINFSFFLFFSMPIPLSMEDKKHFPLAFKLMVVVLFLLLHCVCFCTAVAGSSGGKKGKWQLLLNNTGVVGMHMALTHHGTVIIFDQIGVGQSGYGLRRRYNGTRCMNTQHDLTDWSCFAHSVEYDMSLNKVRPLRLDTDPWCSSGSFLSNGTLLQTGGYGRGSRRIRYFRPCENGHCDWRQSKTLLSDDRWYASSQILPEKDRAIVVGGRQVFSYEFVPKLHSNHRSFDLPFLHRTTNKNEGGNNLYPFVHLSSDGNLFIFANRDSILFNYKRNRVVKSFPRIPGAGSRNYPSSGSSVILPLDHGDRFHKVEVMVCGGAASGAHQAAEQGKFLKGLSSCGRMVITGNTHKWNMENMPGPRLLNDMLILPTGDILIINGAKRGCAGWKNAADPSLQPYLYKPKKTLGRRFSVLKSTKIARMYHSSAILTPDGRVLVAGSNPNNKYTFRNVRYPTELRLQAFVPAYMDRQYHNTRPGNVSIHYGSGTNGGVRYGEGFSVRFWLGKKPSKTVEFSAYAPPFTTHSISMNQRMLKLRCKSMVRGEGGWINAALEAPPSPNVAPSGYYMLTVINGGIPSISQWIRIIHA* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0956 597 Pfam Galactose oxidase-like, Early set domain 499 594 IPR015202 -
Vvi17g0956 597 Gene3D - 66 484 IPR037293 -
Vvi17g0956 597 PANTHER SECRETED PROTEIN-RELATED 49 594 - -
Vvi17g0956 597 SUPERFAMILY Galactose oxidase, central domain 136 478 IPR011043 -
Vvi17g0956 597 SUPERFAMILY E set domains 483 594 IPR014756 -
Vvi17g0956 597 Gene3D Immunoglobulins 493 597 IPR013783 -
Vvi17g0956 597 CDD E_set_GO_C 482 594 IPR015202 -
Vvi17g0956 597 Pfam Glyoxal oxidase N-terminus 84 331 IPR009880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0956 Vvi-Chr17 11406858 11408651 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0956 - - vvi:100253501 1203.73