Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0955 ATGGGTGGAAAAAGTTCAAAAAGATCAATTTCGAGACAATCTTCACATTTAGGGTCTAGTTCATATTCATGGGGTCATCATGACCAGTCACAGATACCATATGCTCAACCAGCCCCAGGCTACCTGCCACAGCAGCATTATAACCATCCACCTCCAACTTATGGTGGCCAGAACCCTGGGTCCAAAAGGAAGTATTCAAAAATAGAAGATAATTACAATTCCCTGGATCAGGTTACTAGTGCCCTGGCACAGGCAGGCCTGGAGTCCTCAAACCTCATTGTTGGCATTGATTTCACAAAGAGTAACGAGTGGACAGGTGCAAGATCATTCTATCGGAGAAGTTTGCATCATGTTGGAGATGATCAAAATCCCTATGAGCAAGCAATATCAATCATTGGGAAAACATTGTCTAAGTTTGATGATGATAACTTGATTCCCTGTTTTGGATTTGGAGATGCATCGACACATGATCGAGATGTCTTCAGTTTCTATTCAGATGAGAGATTTTGTAATGGATTTGAGGAAGTCTTGAAACGCTATAGAGAATTAGTCCCTCATCTACGACTTGCAGGACCAACATCTTTTGCTCCCATCGTTGAAATGGCCATCACTATTGTTGAGCAAAGTGGTGGCCAGTATCATGTTTTGTTGATAATAGCTGATGGTCAGGTGACAAGAAGTGTAGATACTGAGCATGGCCAGCTAAGTCCCCAGGAAAAGAGAACTGTTGAAGCCATTGTGAAAGCAAGTGAGTATCCGCTGTCAATAATATTAGTTGGGGTTGGAGATGGACCATGGGATATGATGAAGGAATTTGATGATAACATGCCTGCCCGAGCCTTTGATAATTTCCAGTTTGTAAATTTTACAGAGATTATGTCAAAGAATATGGATAGATCCAGAAAAGAAACAGAGTTTGCTCTTTCAGCCTTAATGGAAATACCCTCTCAGTATAAAGCAACAATGGAGCTTAATATATTGGGTTCTCACAGGGGGAAGGCTATAGACAGGGTCCCTCTCCCCCCTCCTCTTTATGGTGCAAATTCTTTCAGCTACTCAAAACCTCCGCAATCAAGCAGCTTCCAACCAAGTGCACCTTCCTCTGATCAACATAGTGCATCAATTCACACTTCTGCACCTGCAAGTTCATTGGCAGATAATAATGTTTGTCCCATTTGTCTTACCAATAAAAAAGACATGGCCTTCGGTTGTGGGCATCAGACATGCTGTGAATGTGGACCCGACCTTGACTTATGCCCCATTTGCCGGAGCCCCATCCAAACTAGGATAAAGCTCTATTAA 1302 0.4255 MGGKSSKRSISRQSSHLGSSSYSWGHHDQSQIPYAQPAPGYLPQQHYNHPPPTYGGQNPGSKRKYSKIEDNYNSLDQVTSALAQAGLESSNLIVGIDFTKSNEWTGARSFYRRSLHHVGDDQNPYEQAISIIGKTLSKFDDDNLIPCFGFGDASTHDRDVFSFYSDERFCNGFEEVLKRYRELVPHLRLAGPTSFAPIVEMAITIVEQSGGQYHVLLIIADGQVTRSVDTEHGQLSPQEKRTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNMPARAFDNFQFVNFTEIMSKNMDRSRKETEFALSALMEIPSQYKATMELNILGSHRGKAIDRVPLPPPLYGANSFSYSKPPQSSSFQPSAPSSDQHSASIHTSAPASSLADNNVCPICLTNKKDMAFGCGHQTCCECGPDLDLCPICRSPIQTRIKLY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0955 433 Pfam Zinc finger, C3HC4 type (RING finger) 387 428 - -
Vvi17g0955 433 PANTHER COPINE FAMILY PROTEIN 1 14 410 - -
Vvi17g0955 433 MobiDBLite consensus disorder prediction 1 65 - -
Vvi17g0955 433 SUPERFAMILY RING/U-box 384 429 - -
Vvi17g0955 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 433 IPR013083 -
Vvi17g0955 433 Pfam Copine 114 327 IPR010734 -
Vvi17g0955 433 SUPERFAMILY vWA-like 90 273 IPR036465 -
Vvi17g0955 433 ProSiteProfiles Zinc finger RING-type profile. 390 423 IPR001841 -
Vvi17g0955 433 MobiDBLite consensus disorder prediction 1 30 - -
Vvi17g0955 433 MobiDBLite consensus disorder prediction 352 383 - -
Vvi17g0955 433 SMART VWA_4 89 292 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0955 Vvi-Chr17 11402855 11405881 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0955 K16280 - vvi:100251913 842.417