Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0941 ATGGACTCTGCAACTATCAGAGCTTCTTCGTCTTCTCTCTCTTCTTCTTCTTCCTCCTTTTTTTCTCTTTTGCCTAACCCTAACCCTAGCCCTAACCCGGGCTTGTTTTCGTTGAGGTTTCCGGGTGGTGATTTGCCCGTGTTTAAGTCTATCAGGTGCATTCAGTCGCCGCCTCCTGATTCAGCTCCCTCCTCCCAGTCTCCGCTCAAGCCCAATTCTCGGAGTCCTGGGTTTTCCTTCTCTTGTTCGGCGGTGTCGTTTTCTCCGTCGCGAACGTCGGAGCTCGCGTCGTGCAAGCTGGGCCGTTTGATCTCTGAGTTTCGGACTCTGGAGGAGCCGGTTGATCGCGTGAAGCGACTGCTGCACTACGCGAGTGTGCTTCCGCCGTTGGAGGAGTCCGCGCGGGTGGCGGGAAATCGAGTCATGGGGTGTACGGCGCAGGTGTGGTTGGAGGTAAAGATGGATGGAGAGGGGAGGATGAGATTCGCGGCGGACTCGGACTCGGAGATCACGAAGGGGTTTTGTTCGTGTTTAATTTGGGTGCTGGACGGGGCGGCGCCGGAGGAGGTATTGGCGTTGAAAACGGATGATTTGGCTGCCTTGAATGTTGGGTTGCCCGGTGCTGGTCATTCCAGAGTGAATACTTGGCACAATGTTTTGATTGTTATGCATAAAAGGACTAAGGCTTTGGTCGCCGAGAGAGCGGGAAAGCCTCGTGCCGATCCTTTTCCGTCGCTAGTAATCAACGCTGATGGTATCCATGCAAAGGGAAGCTATGCTGAAGCCCAGGCAAGATTTCTGTTTCCAGAGGAATTAAAGGTTAAAGAACTAGTCAATGTGCTAAAGGAGAAGAAAATTGGTGTTGTGGCACACTTTTACATGGATCCTGAGGTCCAAGGTGTCTTGACTGCTGCACAGAAGGAGTGGCCTCACATTTACATCTCTGACTCATTAATTATGGCAGATATGGCTGTCAAGATGGCAAAAGCTGGATGTCAATTCATTGCAGTTTTGGGCGTAGATTTTATGGCAGAAAATGTGCGTGCCATCCTTGATCAAGCTGGCTTTGGAGAGGTTGGTGTTTACAGGATGTCAAATGAACGCATTGGTTGCTCTTTGGCAGATGCTGCTGCTACACCTGCATATATGAATTATCTTGAAGCTGCTTCTGCCTCACCTCCTGCTTTGCATGTTGTTTATATAAACACTTCGTTAGAGACAAAAGCATATGCTCATGAACTTGTGCCAACAATTACCTGTACTTCTTCTAATGTTGTGCAAACCATTCTGCAGGCATTTGCTCAAGTTCCAAATTTAAACATATGGTATGGACCTGATACCTACATGGGTGCAAACATTAGGGAGTTGCTTCAGCAAATGACTACAATGACTGATGAAGAAATTGCTGTGATACATCCACAACACAATAGAGATTCAATAAAATCATTGCTATCTCACCTGCATTATTATCAGGATGGAACATGCATTGTCCATCATCTTTTTGGACATGAAGTTGTGGAGAAGATAAATGAAATGTACTGCGATGCATTCCTAACTGCTCATTTGGAGGTCCCTGGAGAAATGTTCTCTCTGGCTATGGAAGCAAAGAGAAGAGGAACGGGGGTGGTGGGTTCCACCCAAAATATATTAGATTTCATAAAACAGAGAGTTCAAGAATCTTTGGATAAGAATCGGAATGACCACCTCCAATTTGTATTAGGAACAGAATCAGGAATGGTGACTTCAATTGTTGCAGCAGTTCGGACTTTGTTAGGTTCTGCTAAATCCTCTTCTGGGAGTGCAGATGTCACTGTTGAGATTGTCTTTCCTGTTTCATCAGAATCATTGACCAAAACATCATCAAATTCATACCTGGGGCGAAATTCTGCTGAAATGGGCGGTTTCATACTCCCCGTGATACCTGGAGTTGCTAGTGGGGAGGGATGCTCTATTCATGGTGGCTGTGCATCCTGTCCTTACATGAAGATGAATTCTCTTAGCTCACTGCTTAAAGTTTGCCACCATCTGCCTCATGAGAAAGAAGTACTCTCAGACTATGAAGCTGGGCGATTCCATTTGCAAACTCCTAATGGGAATTCTATCGCAGATGTTGGATGTGAGCCCATTTTGAACATGAGACACTTCCAGGCTACAAAAGAATTGCCAGAGAAGCTCGTCTCCCAGATCCTCCATTCGCACAGCAATGGAAGATCAACTTCAATAAGTTGA 2229 0.4652 MDSATIRASSSSLSSSSSSFFSLLPNPNPSPNPGLFSLRFPGGDLPVFKSIRCIQSPPPDSAPSSQSPLKPNSRSPGFSFSCSAVSFSPSRTSELASCKLGRLISEFRTLEEPVDRVKRLLHYASVLPPLEESARVAGNRVMGCTAQVWLEVKMDGEGRMRFAADSDSEITKGFCSCLIWVLDGAAPEEVLALKTDDLAALNVGLPGAGHSRVNTWHNVLIVMHKRTKALVAERAGKPRADPFPSLVINADGIHAKGSYAEAQARFLFPEELKVKELVNVLKEKKIGVVAHFYMDPEVQGVLTAAQKEWPHIYISDSLIMADMAVKMAKAGCQFIAVLGVDFMAENVRAILDQAGFGEVGVYRMSNERIGCSLADAAATPAYMNYLEAASASPPALHVVYINTSLETKAYAHELVPTITCTSSNVVQTILQAFAQVPNLNIWYGPDTYMGANIRELLQQMTTMTDEEIAVIHPQHNRDSIKSLLSHLHYYQDGTCIVHHLFGHEVVEKINEMYCDAFLTAHLEVPGEMFSLAMEAKRRGTGVVGSTQNILDFIKQRVQESLDKNRNDHLQFVLGTESGMVTSIVAAVRTLLGSAKSSSGSADVTVEIVFPVSSESLTKTSSNSYLGRNSAEMGGFILPVIPGVASGEGCSIHGGCASCPYMKMNSLSSLLKVCHHLPHEKEVLSDYEAGRFHLQTPNGNSIADVGCEPILNMRHFQATKELPEKLVSQILHSHSNGRSTSIS* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0941 742 Gene3D - 269 378 IPR036094 GO:0008987|GO:0009435|GO:0051539
Vvi17g0941 742 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g0941 742 Gene3D - 379 467 IPR036094 GO:0008987|GO:0009435|GO:0051539
Vvi17g0941 742 Gene3D - 97 232 - -
Vvi17g0941 742 SUPERFAMILY SufE/NifU 99 233 - -
Vvi17g0941 742 Gene3D - 495 590 IPR036094 GO:0008987|GO:0009435|GO:0051539
Vvi17g0941 742 Pfam Quinolinate synthetase A protein 278 585 IPR003473 GO:0008987|GO:0009435|GO:0051539
Vvi17g0941 742 FunFam Quinolinate synthase, chloroplastic 495 591 - -
Vvi17g0941 742 FunFam Quinolinate synthase, chloroplastic 94 233 - -
Vvi17g0941 742 Pfam Fe-S metabolism associated domain 105 224 IPR003808 -
Vvi17g0941 742 SUPERFAMILY NadA-like 274 682 IPR036094 GO:0008987|GO:0009435|GO:0051539
Vvi17g0941 742 MobiDBLite consensus disorder prediction 56 75 - -
Vvi17g0941 742 PANTHER QUINOLINATE SYNTHETASE A 217 731 IPR003473 GO:0008987|GO:0009435|GO:0051539
Vvi17g0941 742 FunFam Quinolinate synthase chloroplastic 378 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0941 Vvi-Chr17 11153908 11159678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0941 K03517 - vvi:100243361 1417.52