Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0937 ATGGCTGCCTGCGTGACCTTAGCATTTTTGAATTGTGGACAACAGATTCATGGGAGGATTATTCAAAGAGGCCTTGATGGGAATTTGGCCTTGTCTAATGCCCTTATAGACATGTATTCCAAATGTGGAAATATTACTAATTCGCACCAAGTTTTTTGGGGTATGTCTCATAGAGATTTGGTTTCTTGGACTACCATGATGATTGGGTATGAGACTCATGGTCATGCTGGACTTGTAGATGAAGGCTTGAGATATTTTAAATTAATGGTGGGTGATTATAACATTAGTCCAGACCAGGAGATTTATGGGTGTGAAGTGGATTTGCTAGGACGTGCTGGGAAAGTTGAGGAAGCTTATGAACTCATAGAGAGCATGCCATTCAAGCCTGATGAGTGCGTTTAG 402 0.4129 MAACVTLAFLNCGQQIHGRIIQRGLDGNLALSNALIDMYSKCGNITNSHQVFWGMSHRDLVSWTTMMIGYETHGHAGLVDEGLRYFKLMVGDYNISPDQEIYGCEVDLLGRAGKVEEAYELIESMPFKPDECV* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0937 133 FunFam Pentatricopeptide repeat-containing protein 10 104 - -
Vvi17g0937 133 Gene3D Tetratricopeptide repeat domain 1 73 IPR011990 GO:0005515
Vvi17g0937 133 Gene3D Tetratricopeptide repeat domain 74 133 IPR011990 GO:0005515
Vvi17g0937 133 Pfam PPR repeat 107 125 IPR002885 -
Vvi17g0937 133 Pfam PPR repeat 33 57 IPR002885 -
Vvi17g0937 133 Pfam PPR repeat 61 91 IPR002885 -
Vvi17g0937 133 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 76 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0937 Vvi-Chr17 11103746 11104243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0937 1 75 Glycoside Hydrolase AT3G49170 32.051 4.38e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0937 - - vri:117930718 241.891