Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0926 ATGAACCGAGCCAAGGCAATTCTGTTCTCCATCAGATTCACCAACTCATTTCGCTCGACTCAGTTTCGAAGAGCAAGCTCACTGTGCTATCAGCCAAACTCGATTGTAGAGCTTGTTTTGGAAAACGATTGGTCAGACGAGTTAGAGAGCGAGTTAGAAAAATCCAGTTCAGTGTTGACACACGAAACTGTTATCTACGTCCTTAAGAAACTCGACAAAGACCCACAAAGGACTTGGAATTTCTTCAATTGGGTCACCGAGAAAAATGGGTTTAGACCCAGTTCTGCTATGTATAGCTTAATTCTTAGAAGTTTGGTTCACGGGGAGTCTATGAAGCAGTTTTGGGTGACAATTAGGAAAATGAAAGAGCAAGGGTTTTGTATCGATAAGGAGACATATTTAACGATATTAGGGGTTTTTAAGAAGGGAAAGATGGCTAGTGAAGAAGTGGCTTTGACCCACTTCTATAATAGGATGGTTCAAGAGAATGCAATGGATGAGGTTGTTAAGAAGGTGGTTGAACTGGTTACAATGTCCGTCTGGAGCAGTGAGGTTGAGAAAAAACTGGGGGAGTTAAAGAATTCTTTTTCAGATAATTTTGTGTTGCATGTGTTGAGGGAACTAAGAGGATACCCCTTAAAGGCTTTAAGGTTTTTCCAGTGGGTTGGTGAATGTCCGGGTTATGAACACAGTAGCATTACTTACAATGTGATTGCAAGGGTTCTTGGCCGGGATGATTCGATAGGGGAGTTTTGGAGCATGGTTGAGGAAATGAAGAGTAAGGGTCATGAGATGGATATTGATACTTACATAAAGATATCGAGACAGTTTCAGAAGAACAAGATGCTTGAGGATGCAGTGAAGCTTTATGAGATTATGATGGATGGGCCATATAAGCCCTCAGTTCAGGATTGCACCATGCTTTTACGGAGCATCTCATTGAGTAGTAATCCGGATTTAGCTTTGGTTTTTAGAGTCACGGAGAAATATGAGGCTGTGGGTAATTCCCTTTGTAAGGCTGTCTATGATGGGATTCATAGGTCCTTGACAAGTGTGGGAAGGTTTGATGAAGCAGGTAAGATTATGGAGTCCATGAGAAGTGCTGGCTGTGAACCCGACAACATCACATACAGCCAACTGGTTTATGGACTTTGTAAAGCAAGGAAGCTAGAAGAAGCATGTAAGTTGCTGGATGAAATGGAGGCATGTGGATGTGTTCCTGATATCAAGACTTGGACTATTTTGATTCAAGGGCACTGTGCAGCCAAGGAGGTTGATAAGGCATTAATTTGTTTTGCAAAGATGATGGAAAAAAACTGTGATGCTGATGCTGATCTCTTGGAGGTTTTAATAAATGGTTTTCTTAGCCAGAAAAGGATAGATGGTGCTTACAAATTGCTCGTGGAAATGGTGAATACGGCTCATTTAGTACCCTGGCAAGCTACGTATAAACTCATGATCAATAAGCTTTTAGGGGTAAGGAAACTAGAAGAAGCAATAAACCTTCTTCATCTAATGAAGAAACAAAACTACCCACCTTTCCCAGAACCTTTTATTGAATATATTTCAAAGTTTGGAACAGTGGAGGATGCTGGGGAATTCTTGAACGCATTGAGTGCAAAGAAATATCCATCCCAATCAGCTTATGTTCATGTTTTTGAATCGTTTTTTCAGGAAGGCAGAGAGTCTGAAGCCAAGGATCTGCTCTATAAGTGCCCTCATCATATTCGTAAGCATCCAGACATTTGCAAACTTTTTGGGTCTGCAAAGAGTGAGTATGCTACTGAAAAGAGGTAG 1797 0.4107 MNRAKAILFSIRFTNSFRSTQFRRASSLCYQPNSIVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLMKKQNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKYPSQSAYVHVFESFFQEGRESEAKDLLYKCPHHIRKHPDICKLFGSAKSEYATEKR* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0926 598 Pfam PPR repeat 404 435 IPR002885 -
Vvi17g0926 598 Pfam PPR repeat 369 401 IPR002885 -
Vvi17g0926 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Vvi17g0926 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi17g0926 598 Gene3D Tetratricopeptide repeat domain 180 333 IPR011990 GO:0005515
Vvi17g0926 598 Gene3D Tetratricopeptide repeat domain 34 179 IPR011990 GO:0005515
Vvi17g0926 598 NCBIfam pentatricopeptide repeat 411 443 IPR002885 -
Vvi17g0926 598 NCBIfam pentatricopeptide repeat 347 373 IPR002885 -
Vvi17g0926 598 NCBIfam pentatricopeptide repeat 233 266 IPR002885 -
Vvi17g0926 598 NCBIfam pentatricopeptide repeat 375 409 IPR002885 -
Vvi17g0926 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi17g0926 598 PANTHER OS01G0970900 PROTEIN 39 588 IPR044578 GO:0008380
Vvi17g0926 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Vvi17g0926 598 Pfam PPR repeat 233 262 IPR002885 -
Vvi17g0926 598 Pfam PPR repeat 449 471 IPR002885 -
Vvi17g0926 598 Pfam PPR repeat 482 510 IPR002885 -
Vvi17g0926 598 Gene3D Tetratricopeptide repeat domain 346 477 IPR011990 GO:0005515
Vvi17g0926 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0926 Vvi-Chr17 10893694 10895589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0926 288 569 Miscellaneous Gene Families AT4G11690 24.825 1.22e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0926 - - vvi:100246746 1164.44