Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0923 ATGGCTGTGACACTTCCTCTCCTTCCCGCCAAAACCCCAACTGCCAAAACCTCCATTTCACTATTCCCTGAAAACCCTAAGACCCTAATCTTAGAGCAATGCAAAACCATCAGAGACCTGAATGAAATCCATGCCCATCTCATCAAAACGCGCCTTCTCCTCAAACCGAAAGTCGCTGAAAACCTCCTTGAATCGGCCGCCATACTTCTGCCCACTTCTATGGACTATGCTGTCTCCATTTTCCGCCAAATCGATGAACCCGATTCACCGGCCTATAACATTATGATAAGGGGTTTCACATTGAAGCAATCACCCCATGAAGCCATTCTTTTGTTTAAGGAAATGCATGAAAATTCTGTACAACCAGATGAATTCACGTTTCCCTGCATTTTGAAGGTTTGTTCTAGACTGCAAGCTTTAAGTGAAGGAGAACAGATCCATGCCCTGATCATGAAATGTGGATTTGGGTCTCATGGGTTTGTGAAGAACACTTTAATTCACATGTATGCAAATTGTGGTGAAGTTGAGGTTGCTCGCCGCGTGTTTGATGAAATGTCTGAAAGGAATGTTAGAACCTGGAATTCAATGTTTGCAGGGTACACGAAAAGCGGGAACTGGGAGGAGGTTGTGAAGTTGTTCCATGAAATGTTGGAATTGGATATTAGGTTTGATGAGGTCACATTGGTTAGTGTTCTAACCGCTTGTGGGAGATTGGCTGATTTAGAACTGGGAGAGTGGATAAATAGGTATGTAGAAGAGAAAGGGCTGAAGGGGAATCCCACTTTGATCACTTCTCTCGTTGATATGTATGCAAAATGTGGTCAGGTTGATACTGCAAGGCGATTATTTGACCAAATGGATCGCAGGGATGTTGTTGCGTGGAGCGCTATGATCTCTGGTTATAGCCAAGCAAGCCGGTGCAGAGAGGCCCTAGATCTGTTCCATGAGATGCAGAAGGCAAACATTGATCCTAATGAGATTACTATGGTCAGTATACTTTCTTCTTGTGCTGTTCTTGGAGCTTTAGAAACTGGTAAATGGGTCCATTTCTTCATCAAGAAGAAGAGGATGAAGCTCACTGTTACCCTTGGAACTGCACTAATGGATTTCTATGCAAAATGTGGGTCTGTAGAGAGTTCCATCGAGGTTTTTGGAAAGATGCCTGTGAAAAATGTTTTGTCTTGGACAGTGCTAATTCAAGGTCTTGCTAGTAATGGACAAGGGAAAAAGGCTCTTGAGTACTTCTACTTAATGCTGGAAAAGAATGTTGAACCAAATGATGTGACTTTCATTGGTGTTCTTTCTGCTTGCAGTCATGCAGGTTTGGTTGATGAGGGTCGTGATCTTTTTGTTAGTATGAGTAGAGATTTTGGTATTGAACCGAGGATTGAGCACTATGGTTGCATGGTTGATATTCTTGGTCGAGCTGGGCTGATAGAAGAGGCATTTCAGTTCATTAAGAACATGCCCATTCAGCCAAATGCGGTTATCTGGAGAACATTATTGGCATCATGCAAGGTTCATAAAAATGTTGAAATTGGGGAAGAATCATTGAAGCAGCTTATTATATTGGAACCCACACATTCTGGAGATTACATACTTCTTTCAAATATTTATGCATCAGTTGGTAGGTGGGAGGATGCATTAAAGGTGAGGGGTGAGATGAAAGAGAAAGGGATTAAGAAGACACCAGGTTGTAGCTTGATTGAGTTGGATGGAGTAATTCATGAGTTTTTTGCTGAAGACAATGTACATTCTCAGTCTGAAGAAATTTATAATGCTATCGAGGATATGATGAAGCAGATCAAGTCAGCAGGCTATGTGCCCAACACAGCAGAAGCAAGACTAGATGCAGAAGAAGATGATAAGGAATCTTCAGTGTCGCACCATAGCGAGAAGCTGGCTATTGCCTTTGGTCTTATTAAAAGCCCCCCAGGAACTACAATTAGAATAACGAAAAATCTCAGAGTGTGCACTGACTGCCACAATGCAACAAAGCTTGTATCAAAGGTTTTTAACCGAGAAATTGTTGTCAGGGACAGGACTCGCTTCCACCATTTCAAAGAGGGATCATGCTCCTGCAATGACTACTGGTAA 2097 0.4235 MAVTLPLLPAKTPTAKTSISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 289 IPR002885 -
Vvi17g0923 698 Pfam E motif 508 570 IPR046848 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 292 326 IPR002885 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 91 124 IPR002885 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 163 190 IPR002885 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 192 224 IPR002885 -
Vvi17g0923 698 NCBIfam pentatricopeptide repeat 264 292 IPR002885 -
Vvi17g0923 698 FunFam Pentatricopeptide repeat-containing protein mitochondrial 346 454 - -
Vvi17g0923 698 Pfam DYW family of nucleic acid deaminases 606 698 IPR032867 GO:0008270
Vvi17g0923 698 Gene3D Tetratricopeptide repeat domain 440 638 IPR011990 GO:0005515
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Vvi17g0923 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 635 IPR046960 GO:0003723|GO:0009451
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 188 IPR002885 -
Vvi17g0923 698 Pfam PPR repeat family 289 337 IPR002885 -
Vvi17g0923 698 Pfam PPR repeat family 189 235 IPR002885 -
Vvi17g0923 698 Pfam PPR repeat family 87 135 IPR002885 -
Vvi17g0923 698 Pfam PPR repeat family 390 438 IPR002885 -
Vvi17g0923 698 FunFam Pentatricopeptide repeat-containing protein mitochondrial 243 345 - -
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Vvi17g0923 698 FunFam Uncharacterized protein 36 147 - -
Vvi17g0923 698 Gene3D Tetratricopeptide repeat domain 242 343 IPR011990 GO:0005515
Vvi17g0923 698 Gene3D Tetratricopeptide repeat domain 344 439 IPR011990 GO:0005515
Vvi17g0923 698 Gene3D Tetratricopeptide repeat domain 159 241 IPR011990 GO:0005515
Vvi17g0923 698 Gene3D Tetratricopeptide repeat domain 65 158 IPR011990 GO:0005515
Vvi17g0923 698 FunFam Pentatricopeptide repeat-containing protein At3g47530 455 634 - -
Vvi17g0923 698 FunFam Pentatricopeptide repeat-containing protein At4g14850 148 242 - -
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 461 IPR002885 -
Vvi17g0923 698 SUPERFAMILY TPR-like 200 551 IPR011990 GO:0005515
Vvi17g0923 698 Pfam PPR repeat 465 489 IPR002885 -
Vvi17g0923 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0923 Vvi-Chr17 10878778 10880874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0923 72 698 Glycoside Hydrolase AT3G49170 37.421 1.88e-158 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0923 - - vvi:100258733 1402.11