Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0921 ATGGAGTCTACAAAAGTCATCAAGGTTAAATATGGGAACACACTAAGGCGTTTTAATGCATGCCTTGACGAAAATGGAGAACTGGATCTTGATATCAATGGATTAAGAGCAAAAGTCATCACTCTCTTTAATCTTGTGCCTGATGCTGATCTTACACTGACGTATATTGATGAAGATGGTGACGTGGTAACACTTGTTGATGATGAAGATCTGCATGATGTGATGAGACAGCGCTTGAAGTTCTTGAGGATTACCGTGCTGCTAAATATTGAAAAGGATGGTAGGTCTCACACTCGGTCAAGTGGAAGTTCTACTCCCATGAGATCACCTTTTAACCTGCGCCCATTTCAAGATGGCAATGCTGGTGTTGCTCCCATGAGATCACCTTTTGACCTGCGCCCATTTCAAGATGGCAATGCTGGTGTTGCTCCCATGAGACCACCTTTTGACCTGCGCCCATTTCAAGATGGCAATGCTGGTGTTGCTGAATTTATTAAATCAGTACCAGAGCCACTACTTGAAGCATTTTCGAAACTATCAACAGATTTTACTTCTAAAGCTGCATCCTCTGCTCCAGTGCTTTCTGAGGTTCTTACCTGCCTCTCAAAGATGGGAGAATCCTACCTCAATTCTGTTTCTCCATCTGAGGTTGGTGCAGATTCAAGCACACATAATAGGTCATCTGACAACTCCGTCGATCCTTTAGTGACTGAAAATACAAAAGCTCCGCAAGCTGACAGCAAACAAGAACTGCTGCCAACTGCTGAACTCAAAGATTCAAATTCTAAACTTAATGAAGTGGGAACAACTGGACCCGTGTCTAGAGGTATCGCATCAAATGTTCCTGCTACTGACAACAAGGAGGCTAATGTGGAAAGCAATGTTGCACCAGTTGCATCCAATGATCCCTCTGTGGACAAGAGGAAGGAGACTAAAAAGGAAAGCAAGTATGCACCCATTGCATGTTCTGATTGTGCCAATGATCCCTCTGTGGACAAGAGGAAGGAGACTAAGAAGGAAAGCAAGTATCCACCCGTTGCATGTTCTGATTGTGCTTCTGATGGAAGGAAAGGAACTAAGAAGGGAAGCGTTGATCATTATGGTGAGAAGTTGGCTGATTGTGTTGCATCCACGTGGAATGCAGGATATCCCAGACCCTATAATCCAGATCCTTCCCATATCACTTGTTTGGATAGTGGGATAAGCAAGAAAATTTCTAGTGATGGTAGGAACTATGCGGCTCCAAATTTTGGTAACCCTTTTAGTGACTGCCCATTTACTGGAATGCCTCCAGTAAATAACTCACTTTTGTCTACTGGTGCTCGTCCTCGTCCTCCTCTATTCAAGAGGAGCTACAAAGATGCTATGGGTGGTACCTTCCATAAAGGTATTCAATGTGATGGTTGTGGGGTTCATCCAATAACTGGACCTCGGTTCAAGTCGAAAGTAAAAGAAGATTATGACCTTTGCAGCATCTGCTTCTCTGATATGGGTAATGAGGCTGATTACATTAGAATAGACTGGCCTGCTCGTCAGCATCCATGGTCTTTCAAGATGTCACATGATCCTATGCAACAACCTGAGGTTCATTCCCCAGCACAACCCTATCCCAGTATAGGTTGTGGAATAAGGGTACGTCAGCCGCATCTTGATAGCCGCTTTATTTTGGATGTAAATGTCATAGATGGTACAGTGATGGCCCCATCAATCCCATTCACAAAGACTTGGAGGATGCGCAACACTGGTAATGCTGTGTGGGCTCGAGGAACACGACTTGTATGGATTGGGGGAGATAGATTCAGTGAAAAAGATTCGGTTGAGATTTGTAGGGATTGTGTGCCAATTGGTGAAGAACTTGAAATTTCAGTTGATTTTACTGCACCTGAATTTCCTGGTCGATACATCTCATACTGGAGGATGGCTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAACCTGAATTTTCCTCCTAGTAGTGGTGGGTCTAAAAGCCCTCAGATTATAGATGTGAATGTTGAGCCCGTGGTGGATGGAGGCCTTGTTGAGGTCAATGAACCAGTGAAGCCGATTGTTAAAGAACATGCTAACAAGAACCAGGAACTGAATTTCCCTATTGATGATAACTTGCTAGCCACCAATGTTGTTCCTGGACCTGTTTCACCGGAGAATAATTCATCTGTATCATATCCTATTATAGATTTTTCTGATGCTGCCCCAATTTCTGGAGTTGATAAGGCCGCCTTGGATCAGGCTGCCTTGGAAGAAGTGATGGGTAAAAACGATGGTGTTGAGCAGTCTCTCCTCAAAGCTCTTGATGAGATGGGTTTCAAGTGTGATGCATTTAACAAGGAAATCTTGAGGATGCATGAATATGATTTGGAGGAGACTGTGAACCATCTTTGTGGTGTTGGGGAATGGGATCCTATCCTAGAGGAGTTGAAGGAGATGGGTTTCAATGACACAGAACTGAACAAGAAGCTGTTGAGGAAGAACAATGGCAGTCTCAAGCGCGTGGTCATGGATCTTATTGCTGTAGAGAAATATTAG 2613 0.4397 MESTKVIKVKYGNTLRRFNACLDENGELDLDINGLRAKVITLFNLVPDADLTLTYIDEDGDVVTLVDDEDLHDVMRQRLKFLRITVLLNIEKDGRSHTRSSGSSTPMRSPFNLRPFQDGNAGVAPMRSPFDLRPFQDGNAGVAPMRPPFDLRPFQDGNAGVAEFIKSVPEPLLEAFSKLSTDFTSKAASSAPVLSEVLTCLSKMGESYLNSVSPSEVGADSSTHNRSSDNSVDPLVTENTKAPQADSKQELLPTAELKDSNSKLNEVGTTGPVSRGIASNVPATDNKEANVESNVAPVASNDPSVDKRKETKKESKYAPIACSDCANDPSVDKRKETKKESKYPPVACSDCASDGRKGTKKGSVDHYGEKLADCVASTWNAGYPRPYNPDPSHITCLDSGISKKISSDGRNYAAPNFGNPFSDCPFTGMPPVNNSLLSTGARPRPPLFKRSYKDAMGGTFHKGIQCDGCGVHPITGPRFKSKVKEDYDLCSICFSDMGNEADYIRIDWPARQHPWSFKMSHDPMQQPEVHSPAQPYPSIGCGIRVRQPHLDSRFILDVNVIDGTVMAPSIPFTKTWRMRNTGNAVWARGTRLVWIGGDRFSEKDSVEICRDCVPIGEELEISVDFTAPEFPGRYISYWRMAAPSGQTFGQRVWVLIQVDSSLKDLLGDSMPVINLNFPPSSGGSKSPQIIDVNVEPVVDGGLVEVNEPVKPIVKEHANKNQELNFPIDDNLLATNVVPGPVSPENNSSVSYPIIDFSDAAPISGVDKAALDQAALEEVMGKNDGVEQSLLKALDEMGFKCDAFNKEILRMHEYDLEETVNHLCGVGEWDPILEELKEMGFNDTELNKKLLRKNNGSLKRVVMDLIAVEKY* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0921 870 Pfam PB1 domain 6 85 IPR000270 GO:0005515
Vvi17g0921 870 SMART PB1_new 4 89 IPR000270 GO:0005515
Vvi17g0921 870 CDD UBA_NBR1 785 823 - -
Vvi17g0921 870 SMART zz_5 460 505 IPR000433 GO:0008270
Vvi17g0921 870 SUPERFAMILY RING/U-box 458 510 - -
Vvi17g0921 870 SUPERFAMILY UBA-like 828 866 IPR009060 GO:0005515
Vvi17g0921 870 CDD PB1_Joka2 6 89 - -
Vvi17g0921 870 CDD NBR1_like 548 659 IPR032350 -
Vvi17g0921 870 Gene3D - 2 88 - -
Vvi17g0921 870 MobiDBLite consensus disorder prediction 328 343 - -
Vvi17g0921 870 SUPERFAMILY CAD & PB1 domains 6 87 - -
Vvi17g0921 870 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 866 - -
Vvi17g0921 870 Gene3D - 780 826 - -
Vvi17g0921 870 ProSiteProfiles Zinc finger ZZ-type profile. 461 511 IPR000433 GO:0008270
Vvi17g0921 870 MobiDBLite consensus disorder prediction 254 300 - -
Vvi17g0921 870 MobiDBLite consensus disorder prediction 210 313 - -
Vvi17g0921 870 Pfam Ig-like domain from next to BRCA1 gene 559 658 IPR032350 -
Vvi17g0921 870 MobiDBLite consensus disorder prediction 328 364 - -
Vvi17g0921 870 Pfam Zinc finger, ZZ type 461 496 IPR000433 GO:0008270
Vvi17g0921 870 FunFam next to BRCA1 gene 1 protein-like 545 663 - -
Vvi17g0921 870 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Vvi17g0921 870 MobiDBLite consensus disorder prediction 210 247 - -
Vvi17g0921 870 Gene3D - 827 869 - -
Vvi17g0921 870 Gene3D - 455 526 IPR043145 -
Vvi17g0921 870 CDD UBA_NBR1 827 865 - -
Vvi17g0921 870 FunFam protein NBR1 homolog 827 868 - -
Vvi17g0921 870 Gene3D Immunoglobulins 544 662 IPR013783 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0921 K17987 - vvi:100253588 1739.16