Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0920 ATGAAGCTAGCAGGACCTCTGGTTGTGGTCAATTTCTTACAGTACAGTTTACAGATGATATCTATCATGTTTGTTGGCCACCTTGGAGAGCTTTCTCTATCAAGTGCTTCCATGGCCACTTCATTTGCAGGAGTTACTGGTTTCAGCATCATGCTGGGAATGGGAAGTGCACTGGATACATTCTGTGGACAAGCCTATGGAGCAGAGCAGTACCATATGCTTGGTGTACATATGCAGAGAGCTCTGCTTGTTCTTATGCCAACCTGCATTCCAATTGCATTCGTATGGGCCTACACAGGGAAAATCTTCACAATAATTGGACAAGACCCTGAAATTTCAATGCAGGCTGGAATATATGCTCATTGGCTGATCCCTAGTATTTTCCCTTATGGCATCCTTCAATGCCAAATCAGATTTCTACAGACTCAAAATAATGTGTGGCCATCAACAATCAGTACTGGATTTACAAGTTTAGTTCATATCCTCATGTTTTGGACATTGGTTTTCAAGTTTAGCTTTGGTATCAAAGGTGCTGCCCTGTCCATTGCCATCTCTTATTGGACCAACGTGCTGATTATGGCAATTTATATCAAGTTCTCGCCTGCATGTCAAAAAACTTGGACAGGATTCTCTAAGGAGGGCATGAAAAATCTTCTTAGCTTTACTAGTTTAGCTATTCCTTCATGCCTTATGGTCTGCTTGGAGTTCTGGTCATACGAGTTTTTGGCTCTCATGTCTGGATTTCTTCCCAATCCTAAGCTAGAAGCATCAATGATGTCAATCAGCCTAGACACAAGTGCAGTGGTATACAGAATTCCCTATGGTTTTGGTAGTGCAGTAAGCACAAGAGTTTCGAATGAATTAGGTGCAGGGAGACCACATGCTGCTCGACTTGCTGTACAGGTTGTGCTATTCCTGGCCATCACAGAAGGCCTATCAGTAAGCTTACTTGCAGTTGCAGTGAGAGGGGTATGGGGTTACATGTACACCAATGAGGAGGAACTCATTAGATATTTGGCAGCCATAATGCCAGTGCTTGCTGTATCCAACTTCATTGATGGAATCCAGGGTGCACTCTCAGGTACTGCTAGAGGATGTGGTTGGCAGAAGATTTGTGCTTATGTGAGTCTAGGAGCTTACTACCTTGTGGGCCTTCCTGCTGCAATCATCCTCACTTTTGTCTTGCAGTTTGGAGGAAAGGGGCTTTGGATGGGAATCCTTTGTGGGAGTACTCTGCAAACATTTTTGCTTTTAGCCATTACCATGAGCACCAATTGGGAGCAAGAAGCAAGGAAGGCCAAGGGCAGATTGTGTGCTTCCAGCATCCAAACAGATATGGCATCATGA 1347 0.4402 MKLAGPLVVVNFLQYSLQMISIMFVGHLGELSLSSASMATSFAGVTGFSIMLGMGSALDTFCGQAYGAEQYHMLGVHMQRALLVLMPTCIPIAFVWAYTGKIFTIIGQDPEISMQAGIYAHWLIPSIFPYGILQCQIRFLQTQNNVWPSTISTGFTSLVHILMFWTLVFKFSFGIKGAALSIAISYWTNVLIMAIYIKFSPACQKTWTGFSKEGMKNLLSFTSLAIPSCLMVCLEFWSYEFLALMSGFLPNPKLEASMMSISLDTSAVVYRIPYGFGSAVSTRVSNELGAGRPHAARLAVQVVLFLAITEGLSVSLLAVAVRGVWGYMYTNEEELIRYLAAIMPVLAVSNFIDGIQGALSGTARGCGWQKICAYVSLGAYYLVGLPAAIILTFVLQFGGKGLWMGILCGSTLQTFLLLAITMSTNWEQEARKAKGRLCASSIQTDMAS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0920 448 CDD MATE_eukaryotic 2 432 IPR045069 GO:0042910|GO:1990961
Vvi17g0920 448 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 426 - -
Vvi17g0920 448 NCBIfam MATE family efflux transporter 6 403 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0920 448 Pfam MatE 227 389 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0920 448 Pfam MatE 6 164 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0920 Vvi-Chr17 10859684 10862639 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0920 K03327 - vvi:100243357 892.878