Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0916 | ATGGATCCAAACCCTAAAACCTTCCCGGTTCTCTCTTACGTCATGTCTCGACTTCCTAAACTTGGTTCCAAACCCCCCGCCTCCGACTCATCCCAAATCGACATCGAGTCCGGTGATGTTGGTGCTTCCACGTCTGCCACCGGCGGATCTGGTGAGCTCGTCGATCAGATGCCTCACCTTAGTCACCCCAAAATCTTGGCCTCCATGACTCTTGCTATCTCCGACGTCGCCCAAACCCGATCTGTCCTCCAAACCCTCGGTGAACGACCCGATCACGAGGCAGTCGACAAAGCCAAGGCCAAAATCGTGGAAATCGACTCCCGACTGTCGAAGCAGCTCGAGGAAATCGTGCTCTCGCCTCGGCCGTCGAGCATCGAGCGGCTGCAGTTCAGGGCGCATCAGGCGGAGAAGGAGCAGGAATGCCGGCAGGCGGCGGAGAAGGAGAAGCAGATTTACAAGGCTGTGGTGCAGCTGGATGAGATGCACGAGGCATACGAGAAGTTGTTGAAGGAGGCAGAGGAGAGGCTGGTCAAGCTTTACGAGTCAGCATCGGCTTTTGCCGATGACGTGGAGCATTTGCCCGTGAAGGAGGAGACGAATGAGGAGGTTGTTGGGGTCTTGCAAGAGGCGTCTGGAAAAGGGTTAGAGAGAGTGGATCTATCTGGTCGGCGGTTGCGGTTTTTGCCAGAAGCGTTTGGGAAGATTCGTAGCTTGGTTGCGCTCAATCTCTCTTGCAATCAACTTGAGTTCATTCCTGATTCGATAGCCACACTAGAAAATCTCGAGGAGCTTAATCTTTCTTCAAATCTTTTAGAGTTGCTTCCGGACTCTATTGGGTTGTTGGTTAATTTGAAGATCTTGGATGCCTCTGGGAACAAGCTGCTTGCCTTACCTGATAGCATTTGTCATTGCAGGTCATTGGTCGAGCTGGATGTGAGCTTCAACAACCTGGCATATTTGCCAACTAATATTGGGTATGAATTAGTGAATTTAAAGAGGCTTTCAATCAATCTGAACAAGATCCGTTCCCTTCCCACTTCCATTGGTGAAATGAGGTCTTTGTGCCATCTTGATGCCCACTTCAATGAGCTCCGTGGCCTTCCATCTGCGATAGGGAGATTGACTAATCTCGAGACCCTCAATCTGAGTAGTAATTTCAGTGACCTCACAGAACTTCCTGAAACAATTGGTGATTTAACAAACCTGAGGGAACTTGATCTCAGCAACAACCAAATCCAAGCTCTTCCTGATACTTTTGGCCGGCTTGACAATCTGAACAAGCTCAACTTGGACCAAAACCCTCTTGTTATTCCCCCTATGGAGGTTGTGAATGAAGGAGTTGAAGCTGTTAAGGTTTTCATGGCCAAGAGGTGGCTTGATATTCTTGTGGAGGAAGAACAGAAGAGCTTGCTTGAGGTGAAAGAACAAACAGAGACTGGTTGGTTGACACGCAGCACCTCCTGGTTGGGTAGTGTTGTTTCAGGTGTAAGCCAGAGTGTTTCAGGGTATTTAGGACCTGGTCCCAGAGACCCTTACCTTGATCAGCAATTATGA | 1554 | 0.4955 | MDPNPKTFPVLSYVMSRLPKLGSKPPASDSSQIDIESGDVGASTSATGGSGELVDQMPHLSHPKILASMTLAISDVAQTRSVLQTLGERPDHEAVDKAKAKIVEIDSRLSKQLEEIVLSPRPSSIERLQFRAHQAEKEQECRQAAEKEKQIYKAVVQLDEMHEAYEKLLKEAEERLVKLYESASAFADDVEHLPVKEETNEEVVGVLQEASGKGLERVDLSGRRLRFLPEAFGKIRSLVALNLSCNQLEFIPDSIATLENLEELNLSSNLLELLPDSIGLLVNLKILDASGNKLLALPDSICHCRSLVELDVSFNNLAYLPTNIGYELVNLKRLSINLNKIRSLPTSIGEMRSLCHLDAHFNELRGLPSAIGRLTNLETLNLSSNFSDLTELPETIGDLTNLRELDLSNNQIQALPDTFGRLDNLNKLNLDQNPLVIPPMEVVNEGVEAVKVFMAKRWLDILVEEEQKSLLEVKEQTETGWLTRSTSWLGSVVSGVSQSVSGYLGPGPRDPYLDQQL* | 518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0916 | 517 | MobiDBLite | consensus disorder prediction | 25 | 51 | - | - | |
| Vvi17g0916 | 517 | ProSiteProfiles | Leucine-rich repeat profile. | 237 | 258 | IPR001611 | GO:0005515 | |
| Vvi17g0916 | 517 | ProSiteProfiles | Leucine-rich repeat profile. | 401 | 422 | IPR001611 | GO:0005515 | |
| Vvi17g0916 | 517 | SMART | LRR_sd22_2 | 281 | 312 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_sd22_2 | 399 | 427 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_sd22_2 | 328 | 359 | - | - | |
| Vvi17g0916 | 517 | MobiDBLite | consensus disorder prediction | 19 | 56 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 281 | 300 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 399 | 418 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 328 | 347 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 374 | 395 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 304 | 323 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 258 | 277 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_bac_2 | 237 | 254 | - | - | |
| Vvi17g0916 | 517 | Gene3D | Ribonuclease Inhibitor | 327 | 448 | IPR032675 | - | |
| Vvi17g0916 | 517 | Gene3D | Ribonuclease Inhibitor | 126 | 319 | IPR032675 | - | |
| Vvi17g0916 | 517 | FunFam | Plant intracellular Ras-group-related LRR protein 9 | 137 | 319 | - | - | |
| Vvi17g0916 | 517 | Coils | Coil | 155 | 182 | - | - | |
| Vvi17g0916 | 517 | FunFam | Plant intracellular Ras-group-related LRR protein 2 | 323 | 496 | - | - | |
| Vvi17g0916 | 517 | Coils | Coil | 95 | 115 | - | - | |
| Vvi17g0916 | 517 | SUPERFAMILY | L domain-like | 213 | 436 | - | - | |
| Vvi17g0916 | 517 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING | 269 | 444 | - | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 235 | 257 | IPR003591 | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 305 | 327 | IPR003591 | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 328 | 351 | IPR003591 | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 374 | 398 | IPR003591 | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 281 | 304 | IPR003591 | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 258 | 280 | IPR003591 | - | |
| Vvi17g0916 | 517 | SMART | LRR_typ_2 | 399 | 422 | IPR003591 | - | |
| Vvi17g0916 | 517 | Coils | Coil | 130 | 150 | - | - | |
| Vvi17g0916 | 517 | Pfam | Leucine rich repeat | 375 | 435 | IPR001611 | GO:0005515 | |
| Vvi17g0916 | 517 | Pfam | Leucine rich repeat | 236 | 294 | IPR001611 | GO:0005515 | |
| Vvi17g0916 | 517 | Pfam | Leucine rich repeat | 305 | 364 | IPR001611 | GO:0005515 | |
| Vvi17g0916 | 517 | ProSiteProfiles | Leucine-rich repeat profile. | 260 | 281 | IPR001611 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0916 | 234 | 435 | Receptor kinase-like Gene Family | AT2G15080 | 34.450 | 2.02e-17 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0916 | - | - | vvi:100265719 | 935.636 |