Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0904 ATGACAAGGGCTCAAACCTGCCATCCGTTGGACCCATTATCTGCAACTGAAATCTCAGTGGCTGTGGCAACTGTCAGAGCTGCTGGAGCCACTCCTGAGGTCAGAGATGGCATGCGATTTGTTGAAGTGGTTCTGTATGAACCTGATAAACATGTTGTTGCATTAGCAGATGCATATTTCTTCCCCCCTTTCCAACCATCATTGCTTCCCAGGACCAAAGGTGGACCTGTAATTCCTAGCAAGCTCCCTCCTAGGAAGGCTAGACTTATTGTCTACAATAAAAAATCAAATGAGACGAGCATTTGGATTGTGGAGCTCTCAGAAGTACATGCAGCAACTCGAGGTGGTCATCATAGGGGAAAAGCCATTACAACACAAGTTGTCCCTGATATTCAGCCTCCAATGGATGCTGTGGAATATGCTGAATGTGAAGCTGTTGTCAAAGACTGTCCTCTGTTTCGAGAGGCAATGAAGAAGAGGGGTGTGGAGGATATGGACCTTGTGATGGTTGATGCCTGGTGTGTTGGTTACCATGGTGAAGCTGATGCTCCTAGCCGTAGACTTGCCAAACCACTCATATTCTGTAGAACAGAGAGTGATTGCCCTATGGAAAATGGTTACGCACGCCCAGTTGAAGGCATCTATGTAGTTGTTGATATGCAAAATATGGTTGTAATTGAGTTTGAAGACCGTAAACTTGTTCCATTGCCTCCAGCTGATCCGTTGAGGAACTATACTCCTGGTGAGACAAGAGGAGGTGTTGATCGAAGTGATGTGAAGCCGCTACAGATTGTTCAGCCAGAAGGTCCAAGCTTTCGTGTACATGGGCACTATGTAGAATGGCAGAAGTGGAATTTCCGTATTGGTTTCACTCCCAGAGAGGGTTTGGTTATCCATTCTGTTGCATATGTTGATGGTAGTCGGGGTCGAAGACCTGTAGCTCATAGGTTGAGTTTTGTGGAGATGGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGGGATGTGATTGTCTAGGGTTTATCAAATACTTTGATGCCCACTTTACAAACTTCACTGGAGGTGTTGAAACGATTGAAAATTGTGTTTGTTTGCATGAAGAGGATCATGGTATCCTTTGGAAGCATCAAGACTGGAGGACAGGCTTAGCAGAAGTTCGTAGGTCTAGGAGGCTAACAGCTTCTTTCATATGTACTGTGGCTAATTATGAGTATGGATTCTTCTGGCACTTTTATCAGGATGGGAGAATTGAGGCGGAAGTTAAACTTACAGGTATTCTCAGCTTAGGAGCGCTGCAACCAGGAGAATCTCGAAAATATGGCACAACCATTGCTCCAGGGCTATATGCACCAGTTCATCAACACTTCTTTATTGCTCGTATGGACATGGCTGTTGATTGTAAACCTGGAGAAGCATTTAACCAGGTTGTTGAAGTGAACATGAAAGTTGAAAACCCTGGGAAGGATAATGTGCACAATAATGCATTTTATGCTGAAGAAAAACTGCTCAGATCTGAAATGCAAGCTATGCGTGATTGTGATCCATTGTCTGCCCGCCATTGGATTGTTAGGAACACAAGAACTGTCAACAGGACTGGACAGCTAACAGGCTACAAGTTAGTACCTGGTTCAAACTGCTTGCCATTAGCTGGTTCTGAGGCCAAGTTTTTGAGAAGAGCTGCTTTCTTGAAGCATAATCTTTGGGTTACCCCATATGCGCGAGATGAGATGTTTCCTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGGTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGCCACATGGGTTCTTCAACTGCTCACCTGCGGTGGACGTCCCCCCGAACGCTTGTGAATTGGATGGGAAGGACAATGATGTGAAGGACAATGGGGTAGCGAAGCCAATTCAGACCGGATTGCTCTCAAAGATCTGA 2115 0.4534 MTRAQTCHPLDPLSATEISVAVATVRAAGATPEVRDGMRFVEVVLYEPDKHVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRKARLIVYNKKSNETSIWIVELSEVHAATRGGHHRGKAITTQVVPDIQPPMDAVEYAECEAVVKDCPLFREAMKKRGVEDMDLVMVDAWCVGYHGEADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYVVVDMQNMVVIEFEDRKLVPLPPADPLRNYTPGETRGGVDRSDVKPLQIVQPEGPSFRVHGHYVEWQKWNFRIGFTPREGLVIHSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNANSLKKGCDCLGFIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTASFICTVANYEYGFFWHFYQDGRIEAEVKLTGILSLGALQPGESRKYGTTIAPGLYAPVHQHFFIARMDMAVDCKPGEAFNQVVEVNMKVENPGKDNVHNNAFYAEEKLLRSEMQAMRDCDPLSARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYARDEMFPGGEFPNQNPRVGEGLATWVKQNRPLEETDIVLWYVFGLVHVPRLEDWPVMPVERIGFMLQPHGFFNCSPAVDVPPNACELDGKDNDVKDNGVAKPIQTGLLSKI* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0904 704 Pfam Copper amine oxidase, N2 domain 8 106 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 PANTHER COPPER AMINE OXIDASE 3 685 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 FunFam Amine oxidase 1 135 - -
Vvi17g0904 704 Pfam Copper amine oxidase, N3 domain 133 236 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 SUPERFAMILY Amine oxidase N-terminal region 4 108 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 SUPERFAMILY Amine oxidase catalytic domain 256 675 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 Pfam Copper amine oxidase, enzyme domain 262 670 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 FunFam Amine oxidase 138 241 - -
Vvi17g0904 704 Gene3D Copper amine oxidase, catalytic domain 249 675 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi17g0904 704 FunFam Amine oxidase 252 677 - -
Vvi17g0904 704 Gene3D - 138 241 - -
Vvi17g0904 704 Gene3D - 1 135 - -
Vvi17g0904 704 SUPERFAMILY Amine oxidase N-terminal region 132 250 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0904 Vvi-Chr17 10673059 10680960 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0904 K00276 - vvi:100267280 1466.83