Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0903 ATGGGTGAAGTCGAAGAGAAGACGATTCAAGATGAACTGACTGTTACGATTCAACTCGCCGACCGAGTCATCAAATCGGCGGAGGAGGCGGAGTCGTCCAAAGCGGAGTGCTCCGAGATTGCGCGTCAAGTGGAGAGGCTGTCCAAGATGCTGCGGTCTGCGGCGCGCCTCGCCACCTCCACGCAGTGGCTGTACGAGCGGCCAGTGCGCCGTATCGCCGCCGACGTGACGAAGAACCTGGACAGAGCGCTGACGCTGGTGCGGAAGTGCAAGCACAGCGGCGTTCTCCGCCAGGTGTTCTCGATAACCACCGCTGCTGATTTCCGGAAGGTATTGGCGCTTCTGGAGTCTTCGATCGGCGACTTGAAGTGGCTTGTGACCATCGTCGACCCGGATGACATCAACCTCACTCTCCCTCCCATAGCCAACAACGACCCCACTCTCGCCTGGGTCTGGTCCTATATAGCTACCATTCAAATGGGTCAACTTCGGGACCGCGTTGAAGCCGCAAACGCCCTAGTTCTTTTGGCTCACAAGAACGACCGCACCAAGAAGATTGTGGTGGACGAAGGTGGGATCATGCCGTTGCTCAAGCTCCTGAAAGAAGGCGCTTCCGCCGACGCCCAAATTGCCGCAGCTAATGCTCTTTTCCACATCGGCAACGAGGAAGAAAGAGTACGATCGATAGCGGACGCGGCCGGAGTTCCAATTATTGTTCAGGTTCTTGGGGAATCGGTGATGAGGGTTCAGGTTAGTGTGGCTAATTTGGTGGCGAGAATGGCGGAAATGGACTCTGCTGTGCGTGAGGCCTTCGCGAGAGAGAACGTGACAAGGCCATTGGTGTCGCTGCTGTCTGTGGATACGGTTTTGGTTCTGGATGATCCTAAGCTCAAACCGAGTAAGCCTAGTATTTCATCTCTTGTTCAATTTAATAAGGAGTTAGCGGGAAAGTCTGCGGGCCATAACAGTTACAACCCTAGCTTGAATTCTGTATCTTCATTCACTTCTTCTGGTGGGCATTCGTCTTTGTCTGTTCATTCCTCTTCAGAAGGTAGTAGTAGGGGTGGGCATAATAGAAAGGACAGGGAGGTTGAGACGCCTGAGTTGAAATTGAAGCTCAAGGTTAGTTGTGCAGAGGCTCTGTGGAAACTGTCCAAAGATAGTGTGTTAAATAGTAGGAAGATCACTGAGACTAAGGGGTTGATTTGTTTGGCAAAGATCATTGAGAAGGAGAAAGGGGAGTTGCAGTATAATTGCTTGATGGCTGTAATGGAGATAGCTATGGTGGCAGAGCAAGATGCTGACCTTCGACGGGCGGCTTTCAAGACTAGTTCTCCTGCTGCCAAAGCAGTCCTGGATCAACTTTTAAGAGTGATTCAAGAAGAGAGCAGCTCAACAATGAAAATTCCTGCTATAAAATCAATTGGGTCCTTGGCACGAACTTTTCCTGCAAGGGAAACCCGAATAATTGGCCCCTTGGTGGCACAGCTTAGCAATAGTGATAATGAGGTAGCTATAGAAGCTACTATCGCCCTGGGCAAATTTGTTCATCCAGAAAATTTCAATCGTGTTGAGCATGCAAAGGCAATTATCGAGTTTGATGGGGTTCCCCCCCTTTTGAGATTGTTGAGGACCAGTGAACGGGCTAACATTTATGGACTTATATTACTATCTTATCTTGCATTGCATGTTGGCAACAGCAAAGCGCTTGAACAAGCTCAGGCCTTGAGTGTTCTTGACTTGGCAATTCGTTCTGGAGTGCCTCAAGATTATAAAGAGTTGTTTGCCAGAGCTATACATAACCTTAATCTTTATCAAGCTGGAGTTCATACCCACAGACCATATCCTCCATAG 1854 0.4968 MGEVEEKTIQDELTVTIQLADRVIKSAEEAESSKAECSEIARQVERLSKMLRSAARLATSTQWLYERPVRRIAADVTKNLDRALTLVRKCKHSGVLRQVFSITTAADFRKVLALLESSIGDLKWLVTIVDPDDINLTLPPIANNDPTLAWVWSYIATIQMGQLRDRVEAANALVLLAHKNDRTKKIVVDEGGIMPLLKLLKEGASADAQIAAANALFHIGNEEERVRSIADAAGVPIIVQVLGESVMRVQVSVANLVARMAEMDSAVREAFARENVTRPLVSLLSVDTVLVLDDPKLKPSKPSISSLVQFNKELAGKSAGHNSYNPSLNSVSSFTSSGGHSSLSVHSSSEGSSRGGHNRKDREVETPELKLKLKVSCAEALWKLSKDSVLNSRKITETKGLICLAKIIEKEKGELQYNCLMAVMEIAMVAEQDADLRRAAFKTSSPAAKAVLDQLLRVIQEESSSTMKIPAIKSIGSLARTFPARETRIIGPLVAQLSNSDNEVAIEATIALGKFVHPENFNRVEHAKAIIEFDGVPPLLRLLRTSERANIYGLILLSYLALHVGNSKALEQAQALSVLDLAIRSGVPQDYKELFARAIHNLNLYQAGVHTHRPYPP* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0903 617 Gene3D - 8 128 IPR036537 GO:0007166
Vvi17g0903 617 PANTHER ARMADILLO REPEAT ONLY 4 7 607 - -
Vvi17g0903 617 Gene3D - 158 313 IPR011989 -
Vvi17g0903 617 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 234 IPR000225 GO:0005515
Vvi17g0903 617 MobiDBLite consensus disorder prediction 339 365 - -
Vvi17g0903 617 Gene3D - 370 604 IPR011989 -
Vvi17g0903 617 SMART arm_5 180 221 IPR000225 GO:0005515
Vvi17g0903 617 SMART arm_5 222 262 IPR000225 GO:0005515
Vvi17g0903 617 SMART arm_5 523 562 IPR000225 GO:0005515
Vvi17g0903 617 SMART arm_5 477 517 IPR000225 GO:0005515
Vvi17g0903 617 SUPERFAMILY ARM repeat 164 602 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0903 Vvi-Chr17 10669751 10671604 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0903 - - vvi:100262114 1092.03