Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0901 ATGGAGGACGGGATAGGGGGTGCGTCGCTCCCGTCAGGGCCTGATGCTAAGAAGCGCCGGGTGTGTTACTTCTATGAGCCCACCATCGGCGACTACTACTACGGCCAAGGGCACCCGATGAAACCTCACCGCATCAGGATGGCGCATAACTTGGTTGTTCATTATGCGCTTCATCGCCGGATGGAGATCAACCGCCCTTTTCCTGCTGGTCCAGATGATATCCGACGGTTTCACTCGGACGACTATGTGGACTTCCTGGCCTCAGTCACACCCGATTCGCTCCATGACCACGCTCACTCTAGATACTTGAAGCGCTTCAATGTCGGCGAGGACTGCCCCGTTTTCGACGGCCTATTCGGCTTCTGCCAGGCCTCCGCCGGCGGCTCCATCGGCGCGGCCGTCAAGCTCAACCGCCGTGACGCTGATATTGCTCTGAATTGGGCGGGTGGGTTGCATCACGCCAAGAAGTCCGAAGCTTCCGGCTTTTGTTATGTCAACGACATCGTTCTGGGTATTCTCGAGCTGCTCAAGGTCCACAGGCGTGTATTATATGTAGATATTGACATCCACCATGGAGATGGTGTTGAGGAGGCATTTTTCACCACTGACAGAGTCATGACTGTGTCTTTCCACAAATTTGGGGATTTCTTTCCAGGGACCGGGCACATTAGAGACATAGGGGTGGGGCCTGGGAAGTACTATGCCCTGAATGTTCCTTTAAATGATGGAATGGATGATGAGAGTTTTCGTGGTCTATTTCGGCCCATTATTCAAAAAGTCATGGCGGTTTATCAGCCAGATGCAGTTGTTCTCCAATGTGGAGCTGATTCTTTGTCTGGTGATAGGTTGGGATGCTTCAATTTGTCTGTGAATGGTCATGCAGATTGCCTTCGTTTTCTTAGATCTTTCAATGTTCCTCTTATGGTCTTGGGAGGAGGAGGGTATACAATCCGGAATGTTGCCCGTTGCTGGTGCTATGAGACGGCAGTAGCAGTTGGGGTGGAACCTGATAATAAATTGCCTTATAATGAATATTATGAGTATTTTGGACCAGATTATACTCTACATATTGAACCATGCAACATGGAGAACCAAAACTCGCCAAAAGATTTGGAGAAAATAAGGAACATGCTACTGGAGCAACTTTCTAGGTTACCACATGCACCCAGTGTACCATTTCAAACAACACCACCTATTACAAAAGTTCCAGAGGAGGAGGAAGAGGATATGGATAAAAGACCTAAACCTCGCATTTGGAATGGAGAGGACTGTGAGTCTGATCCCGATGAAGATGAGAAGCCTCGAGCTCAATTCTCAAACACCAATCATCATCCTACTTCAAATGTTGAGATGAGGGGTGTCACTGGAAAAATCAAAGAAGAGAAAACAACATAA 1395 0.4853 MEDGIGGASLPSGPDAKKRRVCYFYEPTIGDYYYGQGHPMKPHRIRMAHNLVVHYALHRRMEINRPFPAGPDDIRRFHSDDYVDFLASVTPDSLHDHAHSRYLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRRDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIRDIGVGPGKYYALNVPLNDGMDDESFRGLFRPIIQKVMAVYQPDAVVLQCGADSLSGDRLGCFNLSVNGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIEPCNMENQNSPKDLEKIRNMLLEQLSRLPHAPSVPFQTTPPITKVPEEEEEDMDKRPKPRIWNGEDCESDPDEDEKPRAQFSNTNHHPTSNVEMRGVTGKIKEEKTT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0901 464 PANTHER HISTONE DEACETYLASE 2-RELATED 9 345 - -
Vvi17g0901 464 PRINTS Histone deacetylase signature 40 57 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase signature 244 262 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase signature 73 91 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase signature 106 123 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase signature 168 184 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase signature 127 147 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase signature 227 240 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 Pfam Histone deacetylase domain 38 329 IPR023801 -
Vvi17g0901 464 CDD HDAC_classI 24 331 - -
Vvi17g0901 464 FunFam Histone deacetylase 17 396 - -
Vvi17g0901 464 Gene3D Histone deacetylase domain 17 392 IPR037138 -
Vvi17g0901 464 MobiDBLite consensus disorder prediction 385 464 - -
Vvi17g0901 464 SUPERFAMILY Arginase/deacetylase 19 384 IPR023696 -
Vvi17g0901 464 MobiDBLite consensus disorder prediction 401 423 - -
Vvi17g0901 464 PIRSF HDAC_I_euk 7 463 IPR003084 GO:0004407|GO:0016575
Vvi17g0901 464 PRINTS Histone deacetylase superfamily signature 266 276 IPR000286 -
Vvi17g0901 464 PRINTS Histone deacetylase superfamily signature 181 196 IPR000286 -
Vvi17g0901 464 PRINTS Histone deacetylase superfamily signature 149 172 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0901 Vvi-Chr17 10614979 10630650 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0901 K06067 - vvi:100244903 981.474