Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0898 ATGAAACTTCAAATATTGAGGCTCCCGCAATTCTCTAAGCTTCTCTTTGAACTCTCAAAGATTCATCAAACCTTACCCAGAACCAAAAAATTACATGCCTTCATAATCAGGAACCACCTCTCAGATGACCCATTTTATGCTACTAGAATCCTCAGATTCTATGCTATTAACAGTGATCTGTGCTCTGCCCGTAACCTGTTCGATGGAACTTCTTATAGAAGCGTCTACCTTTGGAATTCTGTTATCAGAGCTTATGCAGGAGAGCATCAATTTGATGATGCATTGTTGCTGTTTGCAAAGATGCTTAGAACAGAAATCAAACCTGATAGCTTCACCTTTGCATGTGTTTTGCGGGCGTGTGCTGAAAATTTTGATCCAGATGGATTGAGAGTGGTACATGGAGGAGTTGTGGTTTCCGGGTTAGGATTTGACTCAGTTTGTGGTAGTGCACTGGTGACTGCCTATTCAAAACTATGCATGGTTGATGAAGCAAGTAGGGTATTCTATGGAATGGCAGAGCCGGATTTAGTTTTGTGGAATGCAATGGCTGCTGGTTATGGTTATTGTGGATTCTGGGATAAAGGGCTGCAACTGTTTAGTGCAATGCGAAGCATGGGGGAGCAGCCAGATAGTTACACTATGGTAGGATTGATCTCAGGCTTAGCAGATCCAAGCTTGCTTGGAATAGGAAAAGGAATTCATGGTTTTTGTTTGAAAAGTAGTTTTGATTGTAATGATCATGTGGGCAGTGCACTTGTGAGCATGTACTCAAGATGTCATTGCTTAAATTCAGCATATGGAGTTTTTACCATTTTATCTCAACCTGATTTAGTTACATGGTCGGCTTTGATAACTGGATTGTCCAAGAGTGGAGACTATGAGAAAGCACTGCTCTTCTTCAGGAAAATGAATATGGAAGGTAAAAGGGTGGATCCCATATTGATTGCTAGTGTACTGGCAGCTTCTGGTCAATCAGCAATTTTAGGGCCTGGTAGTGAGATTCATGGATATGTTCTCCGACATGGGCTTGAGTCTGAAGTCATGATTTCCTCTGCTCTCATTGACATGTACTCTAAGTGTGGTTTTGTAAACTTGGGAGTTAGGGTATTTGACTCCATGCCTAACCGAAATACAGTGTCCTACAATTCGATGATTTTAGGTCTTGGAATACATGGACTTGCCCCACAGGCCTTCAAAATGTTTGAAGAGGTATTAGAGAAAGGATTTAAACCTGATGAATCCACATTCTCTGCTCTGCTCTGTACTTGCTGTCATGCTGGCCTTGTTAAAAATGGAAGGGAAATTTTCAGTAGAATGACAGAAGAGTTTCACATCCAAGCTAGAACTGATCATTATGTTCACATGGTAAAGCTTCTTGGAATGGCTGGAGAGTTGCAAGAGGCTTACGATCTTATCCTGTCATTGCAGCAACCAGTAGATTCTGGCATTTGGGGAGCACTGTTGTCATGCTGCAATTTTCATGGAAATCCTGAGCTGGCAGAAATTGTGGCTCAGCAGCTCTTTGAAAATAAACCAGAGAAAAGTGCATACAGAGTAATGCTTTCCAATATATATGCTGGTGATGATAGATGGGATGATGTGAAGAAGTTGAGAGATGATATTCAAGAAGCGGGAATAAAGAAAATGCCGGGGCTTAGCTGGATTGGAGTTGGTCGTATCTAA 1683 0.4153 MKLQILRLPQFSKLLFELSKIHQTLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSYRSVYLWNSVIRAYAGEHQFDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVHGGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEPDLVLWNAMAAGYGYCGFWDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSSFDCNDHVGSALVSMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVDPILIASVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSMPNRNTVSYNSMILGLGIHGLAPQAFKMFEEVLEKGFKPDESTFSALLCTCCHAGLVKNGREIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSLQQPVDSGIWGALLSCCNFHGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVKKLRDDIQEAGIKKMPGLSWIGVGRI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0898 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 442 IPR002885 -
Vvi17g0898 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi17g0898 560 FunFam Pentatricopeptide repeat-containing protein At3g58590 230 328 - -
Vvi17g0898 560 Gene3D Tetratricopeptide repeat domain 432 556 IPR011990 GO:0005515
Vvi17g0898 560 Pfam PPR repeat 177 206 IPR002885 -
Vvi17g0898 560 Pfam PPR repeat 149 171 IPR002885 -
Vvi17g0898 560 Pfam PPR repeat 278 307 IPR002885 -
Vvi17g0898 560 Pfam PPR repeat family 74 121 IPR002885 -
Vvi17g0898 560 Pfam PPR repeat family 376 425 IPR002885 -
Vvi17g0898 560 NCBIfam pentatricopeptide repeat 379 413 IPR002885 -
Vvi17g0898 560 NCBIfam pentatricopeptide repeat 278 307 IPR002885 -
Vvi17g0898 560 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Vvi17g0898 560 NCBIfam pentatricopeptide repeat 76 110 IPR002885 -
Vvi17g0898 560 Gene3D Tetratricopeptide repeat domain 227 329 IPR011990 GO:0005515
Vvi17g0898 560 Gene3D Tetratricopeptide repeat domain 10 132 IPR011990 GO:0005515
Vvi17g0898 560 FunFam Putative pentatricopeptide repeat-containing protein At1g64310 10 130 - -
Vvi17g0898 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Vvi17g0898 560 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 558 IPR046960 GO:0003723|GO:0009451
Vvi17g0898 560 FunFam Putative pentatricopeptide repeat-containing protein At3g18840 333 427 - -
Vvi17g0898 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Vvi17g0898 560 Gene3D Tetratricopeptide repeat domain 334 431 IPR011990 GO:0005515
Vvi17g0898 560 Gene3D Tetratricopeptide repeat domain 133 226 IPR011990 GO:0005515
Vvi17g0898 560 FunFam Pentatricopeptide repeat-containing protein chloroplastic 429 555 - -
Vvi17g0898 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vvi17g0898 560 Pfam E motif 494 555 IPR046848 -
Vvi17g0898 560 FunFam Pentatricopeptide repeat-containing protein 131 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0898 Vvi-Chr17 10603919 10605601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0898 62 558 Glycoside Hydrolase AT3G49170 30.876 3.19e-79 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0898 - - vvi:100253585 1131.32