Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0894 ATGGCCGAGCACCAGCAGCGCCCAGGCTTCATGCCGGAAAAGGGGCCTTCAACTTCACAAGTTCTGGCTGTGATCACCCTCTTCCCCGTCGGTGGCATCCTCTTGGTCCTCTCCGGCCTCACTCTCGCCGGAACCCTCATCGGCCTCACCGTCGCCACCCCACTTTTCGTGATCTTCAGCCCAATCCTGGTCCCCGCAGCTCTGGTTCTCGCACTGGCTATCACTGGATTCCTCACCTCCGGCGCCTTCGGAATCACCGCACTGTCTTCACTCTCTTGGATCGTCAACTACCTCCGGAAAGGCCGCGTAACGGAGCAAATGGAGCATGCAAGGTGGAGAGTGCAGGAGGGTGCGGGCCAGTTGGGCATGAAGGCGAAGGAAGTTGGGCATGGAATCCAAGGCAAGGCACAAGAAACTACAAGGACATGA 429 0.5897 MAEHQQRPGFMPEKGPSTSQVLAVITLFPVGGILLVLSGLTLAGTLIGLTVATPLFVIFSPILVPAALVLALAITGFLTSGAFGITALSSLSWIVNYLRKGRVTEQMEHARWRVQEGAGQLGMKAKEVGHGIQGKAQETTRT* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0894 142 PANTHER OLEOSIN 8 138 IPR000136 GO:0012511|GO:0016020
Vvi17g0894 142 ProSitePatterns Oleosins signature. 44 66 IPR000136 GO:0012511|GO:0016020
Vvi17g0894 142 Pfam Oleosin 19 129 IPR000136 GO:0012511|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0894 Vvi-Chr17 10568866 10569294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0894 12 138 Lipid Metabolism Gene Families AT3G01570 51.163 8.87e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0894 - - vvi:100256947 254.988