Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0893 ATGAAGCATATTGAAGGATATTTGAGGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCTTGAGGCATTTCCTGGTGCTCTCACTCGCCTTGAATGTGGCCTTGATTTCTAGAGTCGTATATGAGGGTGAGAATTGGAGGGAAGAACAGATCAGAGCGTTAATGGCGGATGCCTCAGAAAAATCAGCGCATGTTAGCATGAGCAGCCCCCCTCCGCCGTCACCATCAACGCCATCGTCTATGGCCGTCACCAGCACAGAGATTAAAGATGACGGCGAAAGAGTGATCAATCTCGACCATGGGGATCCGACAATGTATGAGAGGTTTTGGCAACAAATGGGGGACATAACAACCATTGTGATCTCTGGGTGGCAGTCCATGAGTTATTTTTCAGATGTGAAGAACCTATGCTGGTTTTTGGAGCCTGAGTTTGCCAAGCAGATCATTAGATTACACAAAATTGTGGGAAATGCAGTCACTGACAACTATTACATCGTGGTCGGAACAGGTTCCACACAGCTCTTTCAGGCTGCATTATATGCTCTCTCTCCACCCAATGCATCTGAGCCCATGAGCGTGGTATCTGCAGCCCCATTTTACTCGTCCTACCCATCTGTGACGGATTTTCTCAAGTCAGGGCTCTATAAATGGGCTGGTGATGCCAACAATTTCAACAAAGATGGTCCATACATTGAGCTTGTTACTTCCCCTAATAATCCTGATGGATCAATAAGGCAACCTGTTGTCAACCGAAGTGGGGAGAATTTGGTTCATGATTTTGCTTACTACTGGCCACAGTACACTCCAATTTCTTCTCCTGCAGACCATGATCTCATGTTGTTCACTGTCTCAAAAGCCACTGGCCATGCTGGGATGCGCCTTGGTTGGGCTCTTGTGAAGGATAAAGAGGTTGCAAAGAAGATGACTAGCTTCATAGAGCTGAACACGATTGGTGTATCAAAAGACTCGCAGCAGCGAGCTGCCAAAATTCTGCAAGTTATTTCTGATAGCTATGAACCTGTTGGCAACCCAAAACAAAGTGGACCTTTCTTTCACTTTAGCCATAGCATGATGGAAGAGAGGTGGAAAGCGCTGAGGTCAGCAGTAAAACAGAGTGGGCTCTTCAGTCTCCCTGAGTTTCCTTCCAGCTTCTGCAACTTCTTGGGTCAAGCTTTTGGATCACAGCCTGCTTTTGCATGGCTAAAGTGTGAAGGAGGCATTGAGGACTGCGGAAATTTCCTCAAGAGGCATAAGATTTTGACCCGGAACGGGAAGCATTTTGGGGCTAGCCCAGAGTATGTTCGGGTGAGCATGCTGGACAGGGATGAGTCCTTTAATCTCTTTACCAAGAGATTGTCCAGTCTCCATCTCAGCCAGTCCAAAGATCATGAGAAAGAAAGTCCCTGA 1422 0.4698 MKHIEGYLRVSLFLSEMGKLSGVFSLRHFLVLSLALNVALISRVVYEGENWREEQIRALMADASEKSAHVSMSSPPPPSPSTPSSMAVTSTEIKDDGERVINLDHGDPTMYERFWQQMGDITTIVISGWQSMSYFSDVKNLCWFLEPEFAKQIIRLHKIVGNAVTDNYYIVVGTGSTQLFQAALYALSPPNASEPMSVVSAAPFYSSYPSVTDFLKSGLYKWAGDANNFNKDGPYIELVTSPNNPDGSIRQPVVNRSGENLVHDFAYYWPQYTPISSPADHDLMLFTVSKATGHAGMRLGWALVKDKEVAKKMTSFIELNTIGVSKDSQQRAAKILQVISDSYEPVGNPKQSGPFFHFSHSMMEERWKALRSAVKQSGLFSLPEFPSSFCNFLGQAFGSQPAFAWLKCEGGIEDCGNFLKRHKILTRNGKHFGASPEYVRVSMLDRDESFNLFTKRLSSLHLSQSKDHEKESP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0893 473 MobiDBLite consensus disorder prediction 67 88 - -
Vvi17g0893 473 Pfam Allinase 101 460 IPR006948 GO:0016846
Vvi17g0893 473 CDD AAT_like 147 457 - -
Vvi17g0893 473 Gene3D - 88 141 IPR037029 GO:0016846
Vvi17g0893 473 SUPERFAMILY PLP-dependent transferases 90 459 IPR015424 -
Vvi17g0893 473 Gene3D Aspartate Aminotransferase, domain 1 353 461 IPR015422 GO:0003824
Vvi17g0893 473 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 80 459 - -
Vvi17g0893 473 Gene3D - 146 346 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0893 Vvi-Chr17 10560303 10564649 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0893 K16903 - vvi:100262049 939.488