Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0890 ATGGCTCCCAGCTTGAGCAAAGGTGCTCCGGATGTAATGGGGTTGGAGGACGGTCAGTCATCGTCATCGATCACCCTTCAGGGTTCTGATTTTTTGGCTAATGGCCACCCAGTTCTCACGGAAGTCCCTTCTAACATTGTGGCCATTCCATCACCCTCTAGTCCTGGAAACAAGGCCAAAACCATGGTGGGGTGCTTCGTGGGGTTCGAGGCCGGCGAGGCCAAGAGCCGGCACGTCGTCCCCGTCGGGAAGCTCCAGGAAATACCGTTCATGAGCATATTCAGATTCAAGGTGTGGTGGACCACCCACTGGGTAGGAACCCGCGGAGGAGATGTGGAGCACGAGACCCAGATGATGATTCTGGACAAATCGGACATGGGTCGACCCTATGTTCTCCTCCTCCCACTCATAGAAGGTCCCTTCAGAGCCTCTCTCCAGCCGGGAGAAGACGACAACGTCGACATCTGCGTGGAAAGCGGCTCCACCTCCGTGCGCACCTCCGCCTTCCGGAGCTGCCTCTACATGCACGTAGGAGACAACCCTTATGAACTAGTGAAGGACGCAATGAAAGTGGTGAGGGTCCATCTGGGGACCTTCAAGCTTTTGGAAGAGAAGAGCCCTCCAGGTATAGTAGACAAATTTGGCTGGTGTACATGGGATGCATTTTACCTTAAAGTACACCCCGAAGGTGTTTGGGAAGGAGTGAAGGGCCTAGTGGAGGGTGGGTGCCCTCCTGGCATGGTCCTAATAGACGACGGATGGCAGTCCATCGGTCACGACGATGAACCCATCTCCGACCAAGAAGGCATTAACAGAACCGCCGCGGGTGAGCAAATGCCATGTAGGCTCATAAAATTTGAGGAAAACTACAAGTTTAGGGAGTATGAGAGTCCTAGGGTACCCCAGGAGAAGGGTATGGGGGCATTTGTTAGGGACCTCAAGGATGAGTTTAAGAGCGTAGAACATGTGTATGTGTGGCATGCCCTTTGTGGATATTGGGGTGGGATCAGACCCAATGTCCCAGGCATGCCTGAGTCTAGGGTCATCGCTCCTAAGCTGTCACAGGGTTTGCAGATGACTATGGAGGATTTGGCCGTGGACAAGATCGTCAACAATGGTGTGGGGCTGGTGCCGCCGGAGTCGGTGGCGGAAATGTACGACGGCCTCCACTCTCGGCTGCAATCGGTTGGCGTTGATGGAGTCAAGGTTGATGTGATCCACTTGCTAGAGATGGTAGCAGAGGAATATGGTGGGCGAGTGGAGCTGGCAAAAGCCTATTACAAGGCACTGACTGCATCGGTAAGGAAACATTTCAAAGGGAATGGTGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGTTCCTGGGGACTGAGACCATTTCGCTCGGCCGCGTTGGGGATGATTTTTGGTGCACCGACCCTTCCGGAGATCCGAACGGCACATTTTGGCTACAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCCTGTGGATGGGCAACTTCATACACCCTGACTGGGACATGTTTCAATCCACCCACCCATGTGCTGAGTTCCACGCCGCTTCACGGGCTGTCTCCGGGGGACCAATATATGTCAGCGACCACGTCGGGAAACACAACTTCCAGCTCCTGAAAACCCTCGTCTTGCCCGATGGGTCGCTTCTGAGGTGCCAACACTACGCCCTTCCCTCAAGAGATTGCCTGTTCCAGGACCCATTACATGATGGGAAAACCATGCTCAAGATTTGGAACCTTAACAAATACACAGGAGTTTTAGGAGCATTCAACTGCCAAGGAGGAGGGTGGTGCAGAGAAACACGAAGAAACAAGAGCGCCTCCGAGTACTCCCGCACCGTTTCATGCTTGGCAAACCCGAGTAAAGACATAGAGTGGAGCGCCGGGAAGAGTCCCATCTCCACCAAAGATGTGGACCTTTTTGCAGTGTACATGTTTCAGGAGAAGACGATGAAGCTGTTGAAGCCATCAGAGAGCCTGGAGATCTCACTGGATCCATTCAAATTTGAACTCCTCACAGTCTCTCCTGTGAAGGTGTTGCCCAGAAATAATAACAATTCAATTCAGTTTGCTCCATTCGGACTGGTGAACATGCTCAACGGTGGCGGGGCGGTTGAGTGGGTGGAGTTGGATGAAGATGAAGATAGGGTGAAAATTGGAGTGAAGGGATGTGGAGAAATGAAGGCATTTGCATCTGAAAAACCAACTACATGTAAGATCAATGGAGAGGGTGTGAAGTTCAGTTACGAGGCCCATACGGTTGGGGTTCAAGTTCCTTGGCCTAGTTCATCACAAGTGTCAATTGTAGAGTACTTGTTCTGA 2343 0.522 MAPSLSKGAPDVMGLEDGQSSSSITLQGSDFLANGHPVLTEVPSNIVAIPSPSSPGNKAKTMVGCFVGFEAGEAKSRHVVPVGKLQEIPFMSIFRFKVWWTTHWVGTRGGDVEHETQMMILDKSDMGRPYVLLLPLIEGPFRASLQPGEDDNVDICVESGSTSVRTSAFRSCLYMHVGDNPYELVKDAMKVVRVHLGTFKLLEEKSPPGIVDKFGWCTWDAFYLKVHPEGVWEGVKGLVEGGCPPGMVLIDDGWQSIGHDDEPISDQEGINRTAAGEQMPCRLIKFEENYKFREYESPRVPQEKGMGAFVRDLKDEFKSVEHVYVWHALCGYWGGIRPNVPGMPESRVIAPKLSQGLQMTMEDLAVDKIVNNGVGLVPPESVAEMYDGLHSRLQSVGVDGVKVDVIHLLEMVAEEYGGRVELAKAYYKALTASVRKHFKGNGVIASMEHCNDFMFLGTETISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAVSGGPIYVSDHVGKHNFQLLKTLVLPDGSLLRCQHYALPSRDCLFQDPLHDGKTMLKIWNLNKYTGVLGAFNCQGGGWCRETRRNKSASEYSRTVSCLANPSKDIEWSAGKSPISTKDVDLFAVYMFQEKTMKLLKPSESLEISLDPFKFELLTVSPVKVLPRNNNNSIQFAPFGLVNMLNGGGAVEWVELDEDEDRVKIGVKGCGEMKAFASEKPTTCKINGEGVKFSYEAHTVGVQVPWPSSSQVSIVEYLF* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0890 780 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g0890 780 FunFam Probable galactinol--sucrose galactosyltransferase 5 212 552 - -
Vvi17g0890 780 Gene3D Aldolase class I 212 551 IPR013785 -
Vvi17g0890 780 Pfam Raffinose synthase or seed imbibition protein Sip1 29 763 IPR008811 -
Vvi17g0890 780 SUPERFAMILY (Trans)glycosidases 208 558 IPR017853 -
Vvi17g0890 780 PANTHER - 25 778 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0890 Vvi-Chr17 10494464 10498141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0890 2 780 Glycoside Hydrolase AT5G40390 64.223 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0890 K06617 - vvi:100251818 1614.74