Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0887 | ATGTCATCGACCTTAGAAATCGAAGCTCGAGATGTCATTAAGATCGTGCTTCAGTTTTGTAAAGAAAATTCCTTGCACCAAACGTTTCAGACATTACAAAGTGAGTGTCAGGTATCTTTGAATACGGTCGACAGCCTCGAGACATTTATTGCTGATATTAATAGTGGAAGGTGGGATGCAATATTGCCTCAAGTAGCACAACTTAAGCTTCCCAGGAAGAAACTGGAGGATTTGTATGAGCAGATTGTTTTAGAAATGATTGAACTGCGAGAATTGGATACTGCACGTGCTATTTTAAGACAAACTCAGGCAATGGGTGTCATGAAACAAGAGCAGCCTGAAAGATACTTGCGTCTTGAGCATCTTCTTGTTCGAACTTATTTTGATCCACATGAGGCTTATCAAGATTCAACAAAAGAGAAACGTCGTGCTCAAATTGCCCAAGCCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGGGTTACTTCCACCAGGAACACAGTTTGACTTGTTCCGAGGAACAGCTGCTATGAAACAAGATGTAGATGATATGTATCCAACAACTCTCGGGCACACCATCAAGTTTGGAACAAAAAGTCATGCAGAATATGCTCGGTTTTCTCCAGATGGGCAGTTTCTTGTGTCTTGCTCCGTGGATGGATTTATTGAGGTTTGGGACCATATAAGTGGGAAACTTAAGAAGGATCTTCAGTATCAGGCTGATGAAACCTTTATGATGCATGATGATGCTGTCCTTTGTGTTGATTTTAGCAGAGATTCGGAGATGCTTGCATCTGGATCACAAGATGGAAAAATCAAAGTGTGGCGTATAAGGACTGGTCAATGCTTACGCCGACTTGAACGTGCACATTCCCAAGGTGTTACAAGTCTTGTTTTCTCTCGAGATGGAAGTCAGATACTAAGTGCATCCTTTGACAGCACTGCAAGAATCCATGGACTGAAGTCTGGGAAACTGTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCTCCTTTAAGGGGAGGTGACGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTCAAGGACAGGTTGTGAAGAGCTTCTCTTCTGGTAAAAGAGAAGGTGGAGATTTTGTTGCAGCCTGTGTCTCACCCAAAGGAGAATGGATTTATTGTGTTGGTGAAGACAGGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAGGTGCATGAAAAGGATGTAATCGGCGTAACCCATCATCCCCACAGGAATCTGGTTGCTACATATAGTGAAGACAGCACCATGAAATTATGGAAACCTTGA | 1545 | 0.4246 | MSSTLEIEARDVIKIVLQFCKENSLHQTFQTLQSECQVSLNTVDSLETFIADINSGRWDAILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEHLLVRTYFDPHEAYQDSTKEKRRAQIAQALAAEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVDDMYPTTLGHTIKFGTKSHAEYARFSPDGQFLVSCSVDGFIEVWDHISGKLKKDLQYQADETFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSLVFSRDGSQILSASFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGGRVVTASSDCTVKVWDVKTTDCLQTFKPPPPLRGGDASVNGVHLFPKNTDHIIVCNRTSSIYLMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNIYCFSYQSGKLEHLMKVHEKDVIGVTHHPHRNLVATYSEDSTMKLWKP* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 346 | 387 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | Lish | 8 | 40 | IPR006594 | GO:0005515 | |
| Vvi17g0887 | 514 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 365 | 379 | IPR019775 | - | |
| Vvi17g0887 | 514 | Coils | Coil | 72 | 92 | - | - | |
| Vvi17g0887 | 514 | SMART | ctlh | 42 | 94 | IPR006595 | - | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 481 | 514 | - | - | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 203 | 243 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 339 | 378 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 429 | 471 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 296 | 336 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 381 | 427 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 254 | 293 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SMART | WD40_4 | 474 | 513 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 304 | 345 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 481 | 514 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | PANTHER | WD40 REPEAT PROTEIN | 3 | 512 | IPR045184 | GO:0000398 | |
| Vvi17g0887 | 514 | Pfam | LisH-like dimerisation domain | 9 | 38 | - | - | |
| Vvi17g0887 | 514 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 8 | 40 | IPR006594 | GO:0005515 | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 223 | 243 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 346 | 381 | - | - | |
| Vvi17g0887 | 514 | Gene3D | - | 192 | 514 | IPR015943 | GO:0005515 | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 261 | 298 | - | - | |
| Vvi17g0887 | 514 | FunFam | SMU1, DNA replication regulator and spliceosomal factor | 192 | 514 | - | - | |
| Vvi17g0887 | 514 | Pfam | WD domain, G-beta repeat | 340 | 378 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | Pfam | WD domain, G-beta repeat | 297 | 334 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | Pfam | WD domain, G-beta repeat | 222 | 243 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | Pfam | WD domain, G-beta repeat | 264 | 292 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | PRINTS | G protein beta WD-40 repeat signature | 500 | 514 | IPR020472 | - | |
| Vvi17g0887 | 514 | PRINTS | G protein beta WD-40 repeat signature | 280 | 294 | IPR020472 | - | |
| Vvi17g0887 | 514 | PRINTS | G protein beta WD-40 repeat signature | 365 | 379 | IPR020472 | - | |
| Vvi17g0887 | 514 | ProSiteProfiles | C-terminal to LisH (CTLH) motif profile. | 42 | 94 | IPR006595 | - | |
| Vvi17g0887 | 514 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 261 | 302 | IPR001680 | GO:0005515 | |
| Vvi17g0887 | 514 | SUPERFAMILY | WD40 repeat-like | 212 | 513 | IPR036322 | GO:0005515 | |
| Vvi17g0887 | 514 | CDD | WD40 | 221 | 513 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0887 | 259 | 512 | Miscellaneous Gene Families | AT5G08390 | 24.314 | 1.23e-18 | 87.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0887 | K13111 | - | vvi:100241550 | 1039.25 |