Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0886 ATGAAGGAAACACTAAGGTACTTAGCAGGTCTTGCAGGCCCAAGTGGGTATGGCTCCAATTCAACTGCTGAGCAAGTTACGGAAGATTGTTCTCTTCCTTCTCAGCTGACTGCTATAATCACTGGGGCTACGTCGGGCATAGGGGCGGAGACGGCGAGAGTGATGGCTAAAAGAGGGGTGAGAGTGATCATTCCGGCGAGGGACTTGAAGAAAGCAGGTGAAATGAAGGAGAGAATCCAGAAGGAGAGCCCAAAGGCTGAGGTTATAGTGTTGGAGATTGATCTCAGCTCATTTGCCTCCATCAAGAGGTTCTGCTCTGAGTTCTTATCTCTAGGACTCCCCCTACACATCCTCATAAACAATGCAGGAAAGTTCTCTCACAAGTTGGAGTTTTCTGAAGACAAAATTGAGATGTCATTTGCTACAAATTACTTAGGGCATTTTTTATTAACAGAGTTGTTGATAGAGAAGATGGTAGAGACAGCAGCACAAACAGGCATACAGGGAAGGATAATCAATGTTTCTTCGGTAATTCACAGCTGGGTGAAGAGAGATGGCTTTCGTTTCAACCAGATGCTTAACCCAAAAAACTACAATGGCACTAGAGCCTATGCACAGTCCAAACTAGCCAACATATTGCATGCCAAGGAGCTGGCAAGACAGCTTAAGGCAAGAAATGCAAGAGTGACAATCAATGCAGTGCACCCAGGAATTGTGAAGACAGGGATCATCAGAGATCACAAAGGCTTTATCACAGATTCTCTGTTTTTCATAGCATCAAAGCTACTAAAATCGACCTCTCAGGGAGCATCAACGACATGCTACGTAGGACTGAGTAGGAAGACAGAAGGAGTGAGTGGAAAGTACTACGCAGACTGCAACGAGTGTAGCTGCTCAAGCATGGCAAATGATGAAAGTGAAGCACACAACCTATGGAGGCAGAGCCGTGCATTGATCCACAGACGGTTGCGTCTACCAGCTGCTGCTGCCTGA 993 0.4612 MKETLRYLAGLAGPSGYGSNSTAEQVTEDCSLPSQLTAIITGATSGIGAETARVMAKRGVRVIIPARDLKKAGEMKERIQKESPKAEVIVLEIDLSSFASIKRFCSEFLSLGLPLHILINNAGKFSHKLEFSEDKIEMSFATNYLGHFLLTELLIEKMVETAAQTGIQGRIINVSSVIHSWVKRDGFRFNQMLNPKNYNGTRAYAQSKLANILHAKELARQLKARNARVTINAVHPGIVKTGIIRDHKGFITDSLFFIASKLLKSTSQGASTTCYVGLSRKTEGVSGKYYADCNECSCSSMANDESEAHNLWRQSRALIHRRLRLPAAAA* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0886 330 CDD retinol-DH_like_SDR_c_like 37 312 - -
Vvi17g0886 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Vvi17g0886 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 177 IPR002347 -
Vvi17g0886 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Vvi17g0886 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 297 IPR036291 -
Vvi17g0886 330 Gene3D - 27 324 - -
Vvi17g0886 330 Pfam short chain dehydrogenase 37 178 IPR002347 -
Vvi17g0886 330 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Vvi17g0886 330 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Vvi17g0886 330 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Vvi17g0886 330 PRINTS Glucose/ribitol dehydrogenase family signature 163 179 IPR002347 -
Vvi17g0886 330 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Vvi17g0886 330 PANTHER RETINOL DEHYDROGENASE 14 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0886 Vvi-Chr17 10401258 10403544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0886 30 243 Acyl Lipid Metabolism Gene Families AT3G55290 31.507 1.73e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0886 - - vvi:100263820 646.736