Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0880 ATGTCATCTGCAATAAGGGAAAGTGGGCGGGCATTGGCAGAGGCCACCTGCCATGGGATTGTTAGAAGGATGGTGAGCCTTCCAAGAAGCATCATAGGGGGGGTTTCCAGAGTGATGGGTCATGGAATAGACCTCATGGGAATCGGTGGAAGGCGTAATCAGCATCTGCTGCAGCCTAATTTCCAGTTGCCCCATCCGCAGCAGCCTGAAATGGTTCCTGAAGAGTGGGCTTTTCTGACTAGTTTTGAGCAGCAGTATGGCTCCAGCCATCCCTTTTTCTATGTATGCCGCTTCACGGATGCTCTCAAGATGGCAGAAGACGATCACAAGTTCTTGTTCATGTATCTCCACTCGCCCCAACACCCATTCACATACTCTTTCTGCAGTGAGACCCTGTGTTCAGAGCTGGTTACACAGTTCCTTGATGCCAACTTTGTTTCCTGGGGAGCACTCGCAGATAGAGGAGAGGGTTTGCACATGGCTGCCACACTGAGGCCTGGCAGCTTCCCATTCTGCGCTGTGGTAGCTCCTGCTTCGGGTGATAGCCTAGCAGTCCTGCAACAGATTGAAGGGCCAATTTACCCAGCTGAATTGGTGGAGATTCTACAAAGAACAATGGAGGAGCAAGGGCTGGCTTTTGGCAGCAGCTCCAGGGCTGTGGAGGAAGAAAAGCGGAGAGCAGATCGTCGGCTGAGGGAAGAACAAGATGCAGCATATCTTGCTGCTCTTCAGATAGACGAGGAAAAAAGTAGACCCAAAGATTTACGCTCAGAACAAGTAGTCCAGAAAAAACCAGTACAAGCAGCAAAGCACAATCCCTCAAAGAAACAGACCGGTAAAAAGGTGAAAGAGGCCACCACCGTCACAGAAACTCCACACAATGAAACTGCAAATGAAGAAAAGGATTCAAGGGTTACCCAGATACTGATTCGGTTTCCAAATGGGGAAAGAAGGGAGCATAGCTTCTCAGTCATGGATAAAGTCCAGTCGGTTTACAGGTACATTGATTCTCTGGGCTTATCCGGAGTGGGAAACTATAGACTGATATCAAGCTTCCCAAGAAGGGTCTACAGTGTAGAAGAGATGGGAATGACTCTCAAAGATGCTTGCCTTCATCCTAGAGCAAGCCTCTTCCTTGAGCTTCTGTAA 1149 0.4909 MSSAIRESGRALAEATCHGIVRRMVSLPRSIIGGVSRVMGHGIDLMGIGGRRNQHLLQPNFQLPHPQQPEMVPEEWAFLTSFEQQYGSSHPFFYVCRFTDALKMAEDDHKFLFMYLHSPQHPFTYSFCSETLCSELVTQFLDANFVSWGALADRGEGLHMAATLRPGSFPFCAVVAPASGDSLAVLQQIEGPIYPAELVEILQRTMEEQGLAFGSSSRAVEEEKRRADRRLREEQDAAYLAALQIDEEKSRPKDLRSEQVVQKKPVQAAKHNPSKKQTGKKVKEATTVTETPHNETANEEKDSRVTQILIRFPNGERREHSFSVMDKVQSVYRYIDSLGLSGVGNYRLISSFPRRVYSVEEMGMTLKDACLHPRASLFLELL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0880 382 SMART ubx_3 297 381 IPR001012 GO:0005515
Vvi17g0880 382 ProSiteProfiles UBX domain profile. 301 379 IPR001012 GO:0005515
Vvi17g0880 382 PANTHER FAS-ASSOCIATED PROTEIN 14 380 - -
Vvi17g0880 382 CDD UBX 308 380 - -
Vvi17g0880 382 SUPERFAMILY Ubiquitin-like 277 380 IPR029071 -
Vvi17g0880 382 MobiDBLite consensus disorder prediction 250 301 - -
Vvi17g0880 382 SMART 45neu3 77 203 IPR006577 -
Vvi17g0880 382 CDD UAS 93 208 - -
Vvi17g0880 382 Pfam UBX domain 301 380 IPR001012 GO:0005515
Vvi17g0880 382 MobiDBLite consensus disorder prediction 212 231 - -
Vvi17g0880 382 SUPERFAMILY Thioredoxin-like 70 211 IPR036249 -
Vvi17g0880 382 Gene3D Glutaredoxin 74 212 - -
Vvi17g0880 382 MobiDBLite consensus disorder prediction 278 301 - -
Vvi17g0880 382 Gene3D - 300 381 - -
Vvi17g0880 382 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0880 Vvi-Chr17 10309534 10310937 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0880 K18726 - vvi:100241512 761.14