Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0869 ATGCTTTTCTTTGCAGTACTTAGTGCTGTTCTTGCTGTTACCTTTGGCGATAATTCAACAGATTCCTACTGGCTTCTGAGAATTAAATCAGAGCTAGTTGATCCTGTTGGAGTTCTTGCCAACTGGTCTTCAAGAACTAATATTTGTAGCTGGAATGGATTGGTGTGTTCTGATGATCAACTCCATATTATTGGCCTGAGCCTATCTGGGTCAGGTTTATCAGGTTCTATCTCACCGGAGTTCTCACACCTCACTTCACTGCAAACACTTGATTTATCTTTAAACGCCTTCGCTGGGTCGATTCCTCATGAGCTTGGACTGCTTCAAAATCTAAGGGAACTGCTCCTTTATTCAAATTATCTCTCTGGTAAGATTCCCACAGAGATTTGTCTTTTGAAGAAGTTGCAAGTTCTAAGAATAGGAGATAACATGCTAGCGGGTGAAATTACACCAAGCATTGGTAACTTGAAGGAGTTGAGGGTACTGGGTCTTGCTTATTGCCAATTAAATGGAAGTATTCCAGCTGAAATTGGCAATTTGAAGAATCTGAAATTTCTCGATTTGCAGAAGAACAGCCTCAGCAGTGTCATACCAGAAGAGATCCAGGGGTGTGTAGAGCTTCAAAATTTTGCAGCATCAAACAACAAGCTTGAAGGAGAAATCCCTGCCTCTATGGGAAATCTTAAATCACTCCAAATTCTGAACCTGGCCAATAACAGCCTTTCTGGATCAATTCCTATTGAGTTGGGTGGTCTCTCCAATTTGAAGTACTTGAATTTGCTTGGAAATAGATTGAGTGGCATGATTCCGTCAGAGCTAAACCAGTTGGATCAACTCCAGAAGCTCGACTTGTCAAGCAATAATCTCTCAGGAACTATAAACTTCCTCAATACCCAATTAAAGAGTCTTGAGGTTCTGGCTTTATCTGATAATCTTTTGACAGATAGCATTCCCGGCAATTTCTGCACCAGCAGTTCAAGTTTGCGGCAAATTTTTCTGGCTCAAAATAAGCTCTCTGGCACTTTCCCCTTGGAGCTGTTGAACTGTTCCTCAATCCAACAATTAGACCTCTCTGATAACAGATTTGAAGGAGTACTGCCGCCTGAGCTGGAAAAATTAGAGAACCTCACAGATCTTCTACTCAACAATAACAGTTTTTCTGGAAAACTGCCTCCTGAAATTGGAAACATGAGTAGCTTGGAAACTCTTTACCTGTTTGACAACATGATCACAGGTAATATCCCGGTGGAACTCGGGAAGTTACAGAAGTTGAGCAGCATCTACCTCTATGACAACCAGCTGTCAGGAAGCATACCAAGAGAGCTAACAAACTGCTCCAGCTTATCAGAGATTGATTTCTTTGGCAACCATTTTATGGGGTCCATTCCTGCAACAATTGGGAAGCTTAGGAATCTTGTTTTCCTGCAACTGAGGCAGAACGACTTGTCGGGTCCGATCCCACCAAGCTTGGGCTATTGCAAAAAGCTTCACACATTGACATTGGCTGATAACAAGCTCTCGGGTTCATTGCCACCAACATTCAGATTCCTCTCCGAGCTTCACCTCTTTTCTCTCTACAACAACTCATTTGAAGGTCCTCTTCCTGAATCACTTTTCCTTTTAAAAAAACTTGGAATTATTAATTTTTCTCATAACAGGTTTAGTGGGAGCATCCTTCCTCTCTTGGGTTCAGACTTTCTAACCCTGTTGGATTTGACAAACAACAGTTTCTCGGGTCCTATTCCCTCTAGACTAGCCATGTCCAAAAATCTAACCCGCCTTCGTCTTGCACACAATCTTCTTACTGGCAACATTTCTTCTGAATTTGGCCAGCTCAAAGAGCTCAAATTTCTTGATCTGTCATTCAACAATTTCACAGGAGAGGTGGCACCTGAACTCTCAAACTGTAAAAAACTTGAACATGTCTTGCTCAACAATAACCAATTCATAGGCATGATTCCTTCATGGCTAGGGGGCTTACAAAAACTAGGAGAGCTAGATCTTTCATTCAACTTCTTCCATGGAACAGTGCCTGCAGCACTTGGGAACTGTTCAATACTACTGAAGCTCTCACTCAATGACAACAGTCTATCCGGGGAGATCCCACCAGAGATGGGAAATCTCACTTCTCTCAATGTCCTTGATCTGCAAAGAAATAACCTTTCTGGGCAGATTCCTTCCACATTTCAGCAGTGCAAGAAGCTCTATGAACTGAGGCTCTCTGAGAACATGTTGACAGGTTCAATACCATCTGAGCTAGGAACCCTTACTGAATTGCAGGTTATCTTAGACCTGAGCAGAAATCTCTTTTCTGGTGAGATTCCATCATCTCTTGGAAATCTTATGAAGTTAGAATCTTTGAACATCTCTTTCAATCAACTCCAAGGAGAAGTTCCTTCTTCACTGGGAAAGCTGACGAGCCTCCACTTGCTAGACCTGTCAAATAATCATCTCCGGGGCCAACTTCCTTCAACTTTTTCAGAATTCCCACTCAGCTCCTTCATGCTTAATGACAAGCTTTGCGGCCCACCATTGGAATCGTGTTCAGAATATGCGGGTCAGGAGAAAAGGAGATTGTCTAACACTGCTGTTGCAGGGATTATAGTTGCCATTGTCTTCACCTCTACACTAATATGCTTGGTGCTGCTTTACATCATGGTAAGAATCTGGTGTACTTGGAGAAAAGTGATGATTTTGAGCTCGGATGGTGGAGGAACTGAACATAATATAGAAGAGGAGAAATGGGACTATGGAGATGAAAAGAAAAGGAAAGGTGAGTACTGGAAAGTGAACACCATGGCACTGGTTCCTTCCCAAGAAAAACAAAATCTTTCTTCACCAACATGCATTTTCCAACTCAAAATGGATTCTGAAACCATGGAGACTACCATGGTCTGA 2898 0.422 MLFFAVLSAVLAVTFGDNSTDSYWLLRIKSELVDPVGVLANWSSRTNICSWNGLVCSDDQLHIIGLSLSGSGLSGSISPEFSHLTSLQTLDLSLNAFAGSIPHELGLLQNLRELLLYSNYLSGKIPTEICLLKKLQVLRIGDNMLAGEITPSIGNLKELRVLGLAYCQLNGSIPAEIGNLKNLKFLDLQKNSLSSVIPEEIQGCVELQNFAASNNKLEGEIPASMGNLKSLQILNLANNSLSGSIPIELGGLSNLKYLNLLGNRLSGMIPSELNQLDQLQKLDLSSNNLSGTINFLNTQLKSLEVLALSDNLLTDSIPGNFCTSSSSLRQIFLAQNKLSGTFPLELLNCSSIQQLDLSDNRFEGVLPPELEKLENLTDLLLNNNSFSGKLPPEIGNMSSLETLYLFDNMITGNIPVELGKLQKLSSIYLYDNQLSGSIPRELTNCSSLSEIDFFGNHFMGSIPATIGKLRNLVFLQLRQNDLSGPIPPSLGYCKKLHTLTLADNKLSGSLPPTFRFLSELHLFSLYNNSFEGPLPESLFLLKKLGIINFSHNRFSGSILPLLGSDFLTLLDLTNNSFSGPIPSRLAMSKNLTRLRLAHNLLTGNISSEFGQLKELKFLDLSFNNFTGEVAPELSNCKKLEHVLLNNNQFIGMIPSWLGGLQKLGELDLSFNFFHGTVPAALGNCSILLKLSLNDNSLSGEIPPEMGNLTSLNVLDLQRNNLSGQIPSTFQQCKKLYELRLSENMLTGSIPSELGTLTELQVILDLSRNLFSGEIPSSLGNLMKLESLNISFNQLQGEVPSSLGKLTSLHLLDLSNNHLRGQLPSTFSEFPLSSFMLNDKLCGPPLESCSEYAGQEKRRLSNTAVAGIIVAIVFTSTLICLVLLYIMVRIWCTWRKVMILSSDGGGTEHNIEEEKWDYGDEKKRKGEYWKVNTMALVPSQEKQNLSSPTCIFQLKMDSETMETTMV* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0869 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 18 174 - -
Vvi17g0869 965 FunFam Uncharacterized protein 175 269 - -
Vvi17g0869 965 Pfam Leucine Rich Repeat 783 805 IPR001611 GO:0005515
Vvi17g0869 965 SUPERFAMILY RNI-like 355 824 - -
Vvi17g0869 965 Gene3D Ribonuclease Inhibitor 270 365 IPR032675 -
Vvi17g0869 965 Gene3D Ribonuclease Inhibitor 18 171 IPR032675 -
Vvi17g0869 965 Gene3D Ribonuclease Inhibitor 172 269 IPR032675 -
Vvi17g0869 965 Gene3D Ribonuclease Inhibitor 463 563 IPR032675 -
Vvi17g0869 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 270 366 - -
Vvi17g0869 965 SMART LRR_typ_2 300 324 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 469 493 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 84 108 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 421 445 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 373 397 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 228 251 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 180 203 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 660 684 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 612 636 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 708 731 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 132 156 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 756 781 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 805 828 IPR003591 -
Vvi17g0869 965 SMART LRR_typ_2 252 276 IPR003591 -
Vvi17g0869 965 Gene3D Ribonuclease Inhibitor 366 462 IPR032675 -
Vvi17g0869 965 SUPERFAMILY RNI-like 66 387 - -
Vvi17g0869 965 FunFam Uncharacterized protein 367 462 - -
Vvi17g0869 965 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Vvi17g0869 965 Pfam Leucine rich repeat N-terminal domain 20 57 IPR013210 -
Vvi17g0869 965 SMART LRR_sd22_2 612 635 - -
Vvi17g0869 965 SMART LRR_sd22_2 349 378 - -
Vvi17g0869 965 SMART LRR_sd22_2 397 418 - -
Vvi17g0869 965 SMART LRR_sd22_2 421 453 - -
Vvi17g0869 965 SMART LRR_sd22_2 132 158 - -
Vvi17g0869 965 SMART LRR_sd22_2 180 203 - -
Vvi17g0869 965 SMART LRR_sd22_2 276 305 - -
Vvi17g0869 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 560 852 - -
Vvi17g0869 965 Gene3D Ribonuclease Inhibitor 567 856 IPR032675 -
Vvi17g0869 965 PRINTS Leucine-rich repeat signature 805 818 - -
Vvi17g0869 965 PRINTS Leucine-rich repeat signature 279 292 - -
Vvi17g0869 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 463 559 - -
Vvi17g0869 965 PANTHER UNNAMED PRODUCT 6 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0869 Vvi-Chr17 10164104 10167001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0869 34 849 Receptor kinase-like Gene Family AT5G46330 35.706 2.30e-128 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0869 - - vvi:100241613 1823.91