Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0868 ATGAGCTTTCCGGACATTGTGGACTTGTGTAGTGATGATGAGCATGTGGAAGTTGATGTCAAACCAGTTAAATTGGAGCCTAATATCATTGAGAGAGAAATACAACTATTTAAGTGCCATGAAATCCTACAAGCTCAATATCAATTGTCTAAAACCCATTGTAGAACACAGGAGTCTGAAGAAAATAGAGATTCAAATGCTTTAAGTACTGCTCAAAGTAGCACTAGTATATTGGATCAAGGGCAATCTCCAATGGATGATACGAGCCTTTCTTCTACATCACCTATATGTCCTGCACCACTATGTCGTCAATTTTGGAAAGCTGGGAACTATGATGATGAGCTTGGTTCTAAGGTTACACTCCAAAATGGTAAAAATTATTTACATGTGCACCCCATGTTCCTTCATTCAAATGCCACTTCACATAAGTGGGCTTTTGGTGCCATTGCAGAGCTTCTAGACAATGCAGTTGATGAGATTCAAAATGGGGCCACCTTTGTAATTGTAGATAAAACCTCAAATCCAAGAGATGGAAGTCCAGCATTGTTAATTCAAGATGACGGTGGTGGAATGGGCCCAGAAGCAATGCGGTGCTGTATGAGTTTTGGATTCTCAGATAAGAAATCAAAATCGGCAATTGGACAATATGGAAATGGCTTCAAGACCAGCTCTATGAGACTTGGAGCAGATGTTATTGTCTTCAGCCGCCACCTGGACAATGGGAAGTTGACTCAAAGCGCTGGTCTCCTTTCTTATTCATTTCTCAGACAAACAGGCCATGACAGAATAGTAGTACCTATGGTGGATTATGAGTTTAACACATCAACTAGCAATATGGAACCCTTGCATCGATATGGTAAAAAACATTTCACGTCTAATCTCTCCATTCTTTTGCGGTGGTCTCCATATTCAACAGAGCAAGAGCTTCTAAAGCAATTTGATGACATTGGGTATCATGGCACAAAAGTTGTCATCTACAATTTATGGTTCAGTGATGATGGGAATGTGGAGCTGGATTTTGATTCAGATCCTGAGGATATACGTATAGGTGGGGATATCAAACAGGTTACAACAATTCCTGCTTGGAAAACAATAAATGAACAGCACATTGCCAACCGATTCCATATTTCCCTCCGTGTATACTTGTCCATCTTGTACTTGCGAATACCTCAAAATTTCAATATAATATTGCGTGGGAAAGTTGTTGAGCATCATAATATCGCCAATGATCTCAAATTTCCAGAATTCATCTTGTACAGACCTCAAACTGGTGGACTTGTGGAGGGTACAGTTGTAACTACCATAGGGTTTCTTAAAGAAGCTCCACAAGTGAATATCCATGGCTTCAATGTCTACCATAAGAACCGTCTAATACTGCCATTTTGGCAGGTTGTAAACTACTCAGACAGTAGAGGCAGAGGAGTTGTTGGTGTTCTGGAAGCAAACTTTATTGAGCCAATTCACAATAAACAAGATTTTGAAAGAACTTCACTTTTTCAAAAACTTGAAGGCCGCTTGAAGGAAATGACATGGGAATACTGGGATTATCACTGTGGACTAATTGGGTATCAGGTTAAGAAAAAGCCTCGAACACTTGTATCTCCGCATATTTCTTCTCATGGTTCACCACATATTGCTATGGAAAAGCCAATTGGGTTGAATCAGAGTTCCCCTGCTATTGGTAATATAAAAGCAACACCTCCAGGTGGAGCCTTCCAACATCCAGCAGCTACTGCTTCCCATTGTTTAGCTGGAAGACCAGGCGAACCAATAACTGATTCTCAAAGCAGATCCCAACAAGGAGCATCTCTGAAGAGGACAGAGCATGACCATCCTGTAGAACCTGAAAAGAAAAAGCACGCTGGGATAAAGGAAATTGTAACTGACACTCACAGTCAGGAAACACAGCCTGTTGATATTTTTGCAAATCATTCAAAAGACCAAGAGGCCATGACCTTGATGCAAGAAAACAAGAAGCTCCATGCACAATGCTTGGAATATGAGAAGAGGGAGAAAGAACTTAGTGTCAAGATGATACAGCTCCGAAATGAACTAAGAGAGGTTCACAATGAGCAGGCCCGGTTGTTGGCTGAATTGCAACATTTAGACGCAATCAAGGATGAAAAATGA 2130 0.407 MSFPDIVDLCSDDEHVEVDVKPVKLEPNIIEREIQLFKCHEILQAQYQLSKTHCRTQESEENRDSNALSTAQSSTSILDQGQSPMDDTSLSSTSPICPAPLCRQFWKAGNYDDELGSKVTLQNGKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVIVDKTSNPRDGSPALLIQDDGGGMGPEAMRCCMSFGFSDKKSKSAIGQYGNGFKTSSMRLGADVIVFSRHLDNGKLTQSAGLLSYSFLRQTGHDRIVVPMVDYEFNTSTSNMEPLHRYGKKHFTSNLSILLRWSPYSTEQELLKQFDDIGYHGTKVVIYNLWFSDDGNVELDFDSDPEDIRIGGDIKQVTTIPAWKTINEQHIANRFHISLRVYLSILYLRIPQNFNIILRGKVVEHHNIANDLKFPEFILYRPQTGGLVEGTVVTTIGFLKEAPQVNIHGFNVYHKNRLILPFWQVVNYSDSRGRGVVGVLEANFIEPIHNKQDFERTSLFQKLEGRLKEMTWEYWDYHCGLIGYQVKKKPRTLVSPHISSHGSPHIAMEKPIGLNQSSPAIGNIKATPPGGAFQHPAATASHCLAGRPGEPITDSQSRSQQGASLKRTEHDHPVEPEKKKHAGIKEIVTDTHSQETQPVDIFANHSKDQEAMTLMQENKKLHAQCLEYEKREKELSVKMIQLRNELREVHNEQARLLAELQHLDAIKDEK* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0868 709 MobiDBLite consensus disorder prediction 581 620 - -
Vvi17g0868 709 Pfam Morc6 ribosomal protein S5 domain 2-like 377 514 IPR041006 -
Vvi17g0868 709 MobiDBLite consensus disorder prediction 55 92 - -
Vvi17g0868 709 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 147 239 - -
Vvi17g0868 709 MobiDBLite consensus disorder prediction 603 620 - -
Vvi17g0868 709 Gene3D - 132 332 IPR036890 -
Vvi17g0868 709 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 58 707 IPR045261 GO:0016887
Vvi17g0868 709 MobiDBLite consensus disorder prediction 63 92 - -
Vvi17g0868 709 Coils Coil 650 698 - -
Vvi17g0868 709 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 145 346 IPR036890 -
Vvi17g0868 709 FunFam MORC family CW-type zinc finger protein 4 131 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0868 Vvi-Chr17 10124363 10159290 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0868 - - vvi:100263884 1437.17