Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0866 ATGACAAGACAATTAAACTGTGGAAGGCAGCTCAGTTGGCAGGCATTCCCACTCAAGAGCAGAAGGTTCCAGGTAAAGGATCATAAGCCGAAGAAAGTAAAAGAATTGAACCCTAATCCATTCGTGCATTCGGAGAATGTGCTTTTGGCTGAAAGTAGTTTTGTGAGTGGGCAAGATAAACCATCTGTTGCTAATGGTTATGCTTTAGAGTGGACAGAAAAAATAGATAACATGTCCCCATCTCAAGACACGCATGCAAAGAGAGCTAATATTGGAGAGACTGTCTCTGCAAGATGTCGGAAGGTGTATGCTCATGCTCATGATTATAATATTAATTCTATCTCAAATAATAGTGATGGTGAGACATTTGTTTCTGCGGACGACCTTAGGATAAACTTGTGGAACCTGGAGATCAGTGATCAATGTTTTAATATCATTGACATGAAACCATCAAACATGGAAGATCTTACTGAGGTGATAACAGCAGCTGAGTTCCATCCAATTCACTGTAATCTGCTGGCATATAGCAGCTCAAGAGGTTTTATTCGGCTAGTTGACTTGCGACAGTCAGCAATATGTGATCACAATGCAAGAATATTACAACATGGAGAGTCCAGTGGGCTTAAATCGTTTTTTACAGAAATCGTCTCATCTATCTCAGACATTAAGTTTGCATCTGATGGAAGGCATCTCTTAAGTCGTGATTACATGAATCTAAAGCTATGGGATATACGCATGGAGACTTCACCAGTTGCAATTTTTAAGATTCATGAACATCTTCGCCCTAAGTTATGTGATTTGTACAATAATGATGCCATTTTCGATAAATTTGAGTGCTGCTTAAGTGGATATGGACTTCATTTTGCTACGGGATCTTACAGTAATCTTTTACGTATTTTCTCCTATGGAGTTGGAAGCGAAGAAGGAATCACAATGGAAGCTAGCAGAAATCCTAACAGGAAGTCACATCTCCAAGCTGCTCCAAAAGCTAGAAGGTCATCAATAAGCAACCTAACACGGGGATTTAGCAGACAAGCAAATGAAAATTTGAGCTCAGGTAGTAATGAGCTTTCTTGTAACTTGAGCTCCAAGCTGCTACATCTGGCATGGCATCCAACAACAAAGTTCATTGCTTGTGCTGCAGGGAATAGCTTGTATATGTATTATGCCTAG 1173 0.399 MTRQLNCGRQLSWQAFPLKSRRFQVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGYALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDLRQSAICDHNARILQHGESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRMETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGSEEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLLHLAWHPTTKFIACAAGNSLYMYYA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0866 390 MobiDBLite consensus disorder prediction 315 334 - -
Vvi17g0866 390 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 23 390 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 135 162 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 220 247 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 274 300 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 248 273 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 163 191 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 192 219 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 359 388 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 107 134 IPR000009 GO:0000159|GO:0019888
Vvi17g0866 390 SMART WD40_4 354 389 IPR001680 GO:0005515
Vvi17g0866 390 SMART WD40_4 96 135 IPR001680 GO:0005515
Vvi17g0866 390 SMART WD40_4 139 186 IPR001680 GO:0005515
Vvi17g0866 390 SMART WD40_4 205 243 IPR001680 GO:0005515
Vvi17g0866 390 SMART WD40_4 247 301 IPR001680 GO:0005515
Vvi17g0866 390 Gene3D - 23 388 IPR015943 GO:0005515
Vvi17g0866 390 Pfam WD domain, G-beta repeat 99 135 IPR001680 GO:0005515
Vvi17g0866 390 SUPERFAMILY WD40 repeat-like 97 383 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0866 Vvi-Chr17 10053924 10070841 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0866 K04354 - vvi:100243351 730.709