Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0861 ATGGATGTGGCGCATTGCTACCTGGAAGGCAACGCCGATGCGGTGGAGTTTTGCCCACACGACTCCTACCACCATGTTTTAGCGGCTTCAACGTATACGCTGCAAGAGGGTGATCAGCCTAGTAGATCAGGAAGCGTTTCACTGTTCAATATTGATGCTGAGTTCGGGCGTCTTGAATTGGGTCATCGTGTGGACACGGCTGGGATTTTTGATATAAAGTGGAGCCCAGCTGGAAGCACTGCTGTTCCTTCGTTAGCTCAAGCTGATGCTGATGGGTACTTGAGACTCTATGGTTTGGAAAGCGGTTCAAGTGGAGCCGAAGCTCTGGGGGGTTCTTTGACAGAAATCAATGCTGAAAAAATAAGTTCTTCCATGTGCCTTTTCCTGGACTGGAATCCCTCGGCAACATGCATCTCTGTGGGCCTCTCAGATGGTTCTATCTCAATAATTTCCCTGAGAGAGTCCCAATTAGATATATGTCAAGAATGGAAAGCACATGAATTTGAGCTTTGGTCAACTTCCTTTGATATCCATCAGCCACAACTGGTGTACACAGGCTCTGATGACTGTAAATTCAGCTGTTGGGATTTGCGGGATAGTCCTTCAAAGTTGGCATTTCAGAATTCCAAGGTCCATAAGATGGGTGTTTGTTGCATTGCAAAGAGCCCCAGTGACCCTAATTTAGTTCTCACTGGCAGCTATGATGAGCACCTGAGACTATGGGATGTGAGATCAATAATCAAGCCTGTTAATGAAACTTCAATTTGTCTAGGGGGAGGAGTCTGGAGAATCAAGCACCATCCCTCAGTACCAGGTCTGGTCCTGGCAGCTTGTATGCACAATGGGTTTGCAGTTGTCAAGACCAAAGGTGAGGAACCTGAAGTTATTGAAACTTACAGTAAGCATGAATCACTTGCATATGGAGCAGATTGGCAGAGAGGGGACTTGTGTCGGAAAGGCCAAAACAATGGTGGTTCTGTGGTGGCCACATGCTCTTTCTATGACCGTCTTCTGCGGATATGGACGACAGAGAGTAATCTTGTTGCATGA 1050 0.4686 MDVAHCYLEGNADAVEFCPHDSYHHVLAASTYTLQEGDQPSRSGSVSLFNIDAEFGRLELGHRVDTAGIFDIKWSPAGSTAVPSLAQADADGYLRLYGLESGSSGAEALGGSLTEINAEKISSSMCLFLDWNPSATCISVGLSDGSISIISLRESQLDICQEWKAHEFELWSTSFDIHQPQLVYTGSDDCKFSCWDLRDSPSKLAFQNSKVHKMGVCCIAKSPSDPNLVLTGSYDEHLRLWDVRSIIKPVNETSICLGGGVWRIKHHPSVPGLVLAACMHNGFAVVKTKGEEPEVIETYSKHESLAYGADWQRGDLCRKGQNNGGSVVATCSFYDRLLRIWTTESNLVA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0861 349 ProSitePatterns Trp-Asp (WD) repeats signature. 229 243 IPR019775 -
Vvi17g0861 349 SUPERFAMILY WD40 repeat-like 41 346 IPR036322 GO:0005515
Vvi17g0861 349 Pfam WD domain, G-beta repeat 212 242 IPR001680 GO:0005515
Vvi17g0861 349 Gene3D - 9 346 IPR015943 GO:0005515
Vvi17g0861 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 245 - -
Vvi17g0861 349 SMART WD40_4 292 342 IPR001680 GO:0005515
Vvi17g0861 349 SMART WD40_4 202 242 IPR001680 GO:0005515
Vvi17g0861 349 SMART WD40_4 156 196 IPR001680 GO:0005515
Vvi17g0861 349 SMART WD40_4 112 151 IPR001680 GO:0005515
Vvi17g0861 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 245 IPR001680 GO:0005515
Vvi17g0861 349 PANTHER DIPHTHINE METHYLTRANSFERASE 7 345 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0861 K17868 - vvi:100265599 697.197