Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0859 ATGGGTTCCGTTCTCGGCAAGGGAAAGAGCAAGGAGGAAGTGGAAATGGCCCTCGCAAAGGCCAAAGAGATCGTTTCTTCAACACCTGTAGTTGTCTTCAGTAAGACTTACTGTGGTTATTGCAAGAGAGTGAAGCAGCTGCTCTCACAGCTAAAAGCAACCCACAAGACCATTGAACTCGATCAGGAAAGTGATGGAGCTGAAATTCAATCAGCTCTAAGAGAATGGACTGGTCAGAGCACTGTGCCTAACGTATTTATTGGGGGAAAACACATGGGTGGATGTGACTCTGTGATGGAAAAGCACCAGGAAGGCAAGCTTGTGCCCCTTCTCAAAGAGGCTGGTGCCATTGCTGAAGTTTCTACCCAGCTCTGA 375 0.48 MGSVLGKGKSKEEVEMALAKAKEIVSSTPVVVFSKTYCGYCKRVKQLLSQLKATHKTIELDQESDGAEIQSALREWTGQSTVPNVFIGGKHMGGCDSVMEKHQEGKLVPLLKEAGAIAEVSTQL* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0859 124 Pfam Glutaredoxin 30 91 IPR002109 -
Vvi17g0859 124 CDD GRX_GRXh_1_2_like 29 110 - -
Vvi17g0859 124 FunFam Glutaredoxin 2 15 124 - -
Vvi17g0859 124 ProSitePatterns Thioredoxin family active site. 30 48 IPR017937 -
Vvi17g0859 124 Gene3D Glutaredoxin 9 123 - -
Vvi17g0859 124 PRINTS Glutaredoxin signature 75 88 IPR014025 -
Vvi17g0859 124 PRINTS Glutaredoxin signature 89 102 IPR014025 -
Vvi17g0859 124 PRINTS Glutaredoxin signature 30 48 IPR014025 -
Vvi17g0859 124 SUPERFAMILY Thioredoxin-like 19 117 IPR036249 -
Vvi17g0859 124 ProSiteProfiles Glutaredoxin domain profile. 18 118 - -
Vvi17g0859 124 PANTHER GLUTAREDOXIN 2 9 117 - -
Vvi17g0859 124 NCBIfam glutaredoxin 30 110 IPR011899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0859 Vvi-Chr17 9941812 9942497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0859 22 117 Miscellaneous Gene Families AT4G15700 41.667 3.14e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0859 K03676 - vvi:100260385 246.128